{"id":"W1965378730","doi":"10.1074/jbc.m212353200","title":"An NMR-based Model of the Ubiquitin-bound Human Ubiquitin Conjugation Complex Mms2·Ubc13","year":2003,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":98,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; University of Alberta","funders":"","keywords":"Ubiquitin; Ubiquitin-conjugating enzyme; Chemistry; Deubiquitinating enzyme; Biochemistry; Covalent bond; DNA; Ubiquitin ligase; Stereochemistry; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006586948,0.0002063669,0.0003044375,0.00001840728,0.0001420038,0.00002673843,0.0004940455,0.0003373384,0.0002066159],"category_scores_gemma":[0.0002946175,0.0001362171,0.0002873662,0.00008411544,0.0003220251,0.000006603294,0.00005269508,0.0002824763,0.000001134951],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002772072,"about_ca_system_score_gemma":0.0001977816,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001766014,"about_ca_topic_score_gemma":0.000001785883,"domain_scores_codex":[0.9984691,0.0001921073,0.0006075961,0.000241673,0.000233547,0.0002560494],"domain_scores_gemma":[0.9985033,0.00003196658,0.0006445742,0.0003714309,0.0003011351,0.0001475484],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008913381,0.0002001703,0.001958771,0.00004119475,0.00002757249,0.000002135718,0.00001666043,0.0008978663,0.996206,0.000234614,0.0002236929,0.0001022271],"study_design_scores_gemma":[0.0007879167,0.0004517521,0.0007238227,0.00003530722,0.00002206446,0.00004864216,0.0000803535,0.0004166337,0.9943323,0.001204143,0.001715972,0.0001811424],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945967,0.0001776054,0.001243521,0.0001075543,0.00004395134,0.0001175229,0.00005099726,0.00000717365,0.003654982],"genre_scores_gemma":[0.9980189,0.00002038117,0.001150348,0.0004019366,0.0002166131,0.000005614324,0.00005921652,0.00001501953,0.000111931],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003543051,"threshold_uncertainty_score":0.5554771,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05550569672366412,"score_gpt":0.2895791673481318,"score_spread":0.2340734706244676,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}