{"id":"W1965427521","doi":"10.4161/mge.22085","title":"Shuffling of mobile genetic elements (MGEs) in successful healthcare-associated MRSA (HA-MRSA)","year":2012,"lang":"en","type":"article","venue":"Mobile Genetic Elements","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Mobile genetic elements; Methicillin-resistant Staphylococcus aureus; Biology; Staphylococcus aureus; Plasmid; Population; Antibiotic resistance; Microbiology; Medicine; Antibiotics; Genetics; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008418495,0.0004977671,0.0009795093,0.0003957491,0.0001273476,0.00002554683,0.0004177769,0.0002425196,0.0007202206],"category_scores_gemma":[0.0001342205,0.0005218566,0.0002167263,0.0008238117,0.0001548957,0.000120916,0.0002378295,0.000411776,0.0001014285],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006622723,"about_ca_system_score_gemma":0.0002821561,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007069495,"about_ca_topic_score_gemma":0.0004942441,"domain_scores_codex":[0.9945512,0.0002389845,0.001962793,0.0006688415,0.0009765106,0.001601634],"domain_scores_gemma":[0.997559,0.0001083727,0.0007385152,0.0008430811,0.0002908444,0.0004602139],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001389169,0.001300515,0.9234044,0.000374646,0.0001730743,0.00003848244,0.0006494601,0.0001575933,0.05158079,0.000005973426,0.0007101584,0.02146599],"study_design_scores_gemma":[0.00607625,0.001467401,0.9376001,0.0008644848,0.0002782403,0.000009549031,0.0009750384,0.000309353,0.04104728,0.00006659938,0.01057113,0.0007345735],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9901537,0.005355206,0.000143063,0.00006532936,0.0005120047,0.003092559,0.0001150851,0.00007112141,0.0004919249],"genre_scores_gemma":[0.9918353,0.001041063,0.00505359,0.0004203101,0.0001930599,0.0007390211,0.0001146414,0.0001131935,0.0004898375],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02073142,"threshold_uncertainty_score":0.9997233,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01556457315694442,"score_gpt":0.3080974229130224,"score_spread":0.292532849756078,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}