{"id":"W1965525398","doi":"10.1016/j.ymeth.2013.07.031","title":"PTP-central: A comprehensive resource of protein tyrosine phosphatases in eukaryotic genomes","year":2013,"lang":"en","type":"article","venue":"Methods","topic":"Protein Tyrosine Phosphatases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University","funders":"Japan Society for the Promotion of Science; Canadian Cancer Society Research Institute; Ministry of Land, Transport and Maritime Affairs; Japan Science and Technology Agency; Kishimoto Foundation","keywords":"Protein tyrosine phosphatase; Receptor tyrosine kinase; Tyrosine; Tyrosine phosphorylation; Biology; Computational biology; Phosphorylation; Cell biology; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002828265,0.0002221867,0.0003288041,0.00007627485,0.00003403695,0.00002134349,0.0003174385,0.0001254217,0.000152941],"category_scores_gemma":[0.0004192393,0.0002088247,0.00009092924,0.0002323314,0.0001663492,0.000009639564,0.0002377902,0.0001139244,0.00001573912],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002109221,"about_ca_system_score_gemma":0.00006473264,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003669952,"about_ca_topic_score_gemma":0.00001064466,"domain_scores_codex":[0.9982482,0.0004085012,0.0003965654,0.0004042619,0.0001342734,0.0004082329],"domain_scores_gemma":[0.998983,0.00008133728,0.0001606874,0.0005659457,0.0001036781,0.0001053399],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001242553,0.000170258,0.00351194,0.0001354518,0.00004914318,0.000007009582,0.00005698893,0.0001611876,0.9320719,0.0007548879,0.002138946,0.06081801],"study_design_scores_gemma":[0.0006579181,0.000236328,0.01679126,0.00005947605,0.00001234326,0.000005419652,0.00006131088,0.00009516624,0.9452791,0.0004284771,0.0361526,0.0002205967],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7711856,0.2007948,0.02362902,0.0005239585,0.0001828971,0.002965472,0.0002124997,0.00005513107,0.0004506571],"genre_scores_gemma":[0.6679021,0.000330195,0.3298352,0.0004716659,0.0001300777,0.0003625742,0.0003905596,0.00006526764,0.0005123939],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3062062,"threshold_uncertainty_score":0.8515626,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01984229651674592,"score_gpt":0.3088284388426323,"score_spread":0.2889861423258864,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}