{"id":"W1965534094","doi":"10.1093/nar/gkt842","title":"Natural reassignment of CUU and CUA sense codons to alanine in Ashbya mitochondria","year":2013,"lang":"ca","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; University of Illinois at Urbana-Champaign; Yale University; National Institutes of Health; Fonds Québécois de la Recherche sur la Nature et les Technologies; U.S. Department of Energy","keywords":"Biology; Genetics; Genetic code; Saccharomyces cerevisiae; Transfer RNA; Mitochondrion; Mitochondrial DNA; Computational biology; Yeast; Gene; RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001803617,0.000317802,0.0002529281,0.0002523238,0.0002646486,0.0004705498,0.0002092234,0.0003887665,0.0003742342],"category_scores_gemma":[0.0004476648,0.0001668258,0.0002949763,0.0002228145,0.0002768607,0.0002859279,0.0004641858,0.0005750366,0.0003191141],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003595487,"about_ca_system_score_gemma":0.0002478893,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000967645,"about_ca_topic_score_gemma":0.001098128,"domain_scores_codex":[0.9997677,0.00003679728,0.00002436958,0.00006674117,0.00007092402,0.00003352374],"domain_scores_gemma":[0.9994513,0.00008560449,0.0002219218,0.00007526274,0.00007500249,0.00009072446],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005254682,0.000007189004,0.0005041138,0.00001081951,0.000003237299,0.00007575486,0.0000268397,0.0000252873,0.9985349,0.00004962509,0.000008500498,0.0007012821],"study_design_scores_gemma":[0.000006166842,0.0001636427,0.01182691,0.000005774865,0.00001531518,0.0006373354,0.00009830148,0.001177496,0.9846889,0.00009756877,0.001269819,0.00001277451],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968402,0.0004048934,0.00223507,0.00005898055,0.00001477708,0.00001181634,0.00009895845,0.00005388648,0.0002814723],"genre_scores_gemma":[0.9954448,0.0001851655,0.002992746,0.00004632179,0.000008941119,0.00001392731,0.0004651977,0.00004494057,0.0007979848],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000967645,"threshold_uncertainty_score":0.002608716,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02282961854584406,"score_gpt":0.3098059381447257,"score_spread":0.2869763195988816,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}