{"id":"W1965556555","doi":"10.1128/aem.05155-11","title":"Analysis of Clostridium botulinum Serotype E Strains by Using Multilocus Sequence Typing, Amplified Fragment Length Polymorphism, Variable-Number Tandem-Repeat Analysis, and Botulinum Neurotoxin Gene Sequencing","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Botulinum Toxin and Related Neurological Disorders","field":"Medicine","cited_by":57,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Science and Technology Directorate; U.S. Public Health Service; Joint Genome Institute; California Department of Public Health; U.S. Department of Homeland Security; U.S. Department of Energy","keywords":"Multilocus sequence typing; Biology; Genetics; Clostridium botulinum; Amplified fragment length polymorphism; Botulism; Sequence analysis; Gene; Microbiology; Genotype; Genetic diversity; Toxin; Population","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005207708,0.0005247436,0.0004274907,0.002222604,0.0004408842,0.000466877,0.0002541215,0.0003147706,0.000375605],"category_scores_gemma":[0.0011202,0.0002457818,0.0004178841,0.002045887,0.0002498573,0.0002072589,0.0003295182,0.0002326631,0.0001500886],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006482185,"about_ca_system_score_gemma":0.0008516877,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.04215814,"about_ca_topic_score_gemma":0.04843644,"domain_scores_codex":[0.9992114,0.00006688941,0.00008750312,0.0001747457,0.0002951125,0.000164146],"domain_scores_gemma":[0.9991001,0.0001364233,0.0002054126,0.00003829256,0.0004185599,0.0001012821],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007130532,0.0002544613,0.6291314,0.0002035837,0.0002237433,0.001508961,0.0007190797,0.001078249,0.3409072,0.0001294711,0.0001633169,0.02496743],"study_design_scores_gemma":[0.00003028806,0.0004783196,0.9611173,0.00002947289,0.000122478,0.001587242,0.0006617947,0.001302085,0.03275302,0.00004671094,0.001846163,0.00002514311],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966841,0.0002604238,0.001381208,0.00001777587,0.000007149878,0.00007884705,0.0009190955,0.00001028625,0.0006409908],"genre_scores_gemma":[0.9863158,0.0004689422,0.009332876,0.00007519468,0.000008840015,0.00005245411,0.002995875,0.00001380246,0.0007362866],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04215814,"threshold_uncertainty_score":0.08382547,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02584595813198697,"score_gpt":0.2295113110848775,"score_spread":0.2036653529528906,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}