{"id":"W1965744864","doi":"10.1186/1471-2105-12-s9-s14","title":"Origin and evolution of gene families in Bacteria and Archaea","year":2011,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Laurentian University; McMaster University","funders":"","keywords":"Genome; Biology; Gene; Horizontal gene transfer; Archaea; Gene duplication; Genetics; Gene family; Genome evolution; Bacterial genome size; Gene cluster; Genome size; Evolutionary biology; Computational biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007445251,0.0003489235,0.0004165056,0.001778839,0.0006161908,0.0006551051,0.0005177983,0.0008107476,0.0008857906],"category_scores_gemma":[0.004240341,0.0003082081,0.0005827986,0.001149032,0.0008318012,0.0009961744,0.0006367289,0.0003971395,0.0003140263],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001078769,"about_ca_system_score_gemma":0.0004292909,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002355269,"about_ca_topic_score_gemma":0.001444487,"domain_scores_codex":[0.999576,0.0001035455,0.00002413112,0.0001477766,0.00009261172,0.00005582675],"domain_scores_gemma":[0.9978843,0.001176907,0.0004463072,0.0001566694,0.0001915032,0.0001442173],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006622819,0.0001073794,0.821588,0.0004360797,0.000371501,0.0006315149,0.001405558,0.07742052,0.04253925,0.006481203,0.0004516708,0.04790501],"study_design_scores_gemma":[0.00004544494,0.0003231057,0.7795833,0.0001597171,0.0001618512,0.003455225,0.0007708936,0.1735962,0.009090197,0.02633568,0.006373094,0.0001053399],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927381,0.001197183,0.005224633,0.00005203785,0.000002039452,0.0000123896,0.0002796451,0.00004209064,0.0004519364],"genre_scores_gemma":[0.9942316,0.0004605606,0.004528049,0.00001789314,0.000003677444,0.00002433241,0.0005761707,0.00002157645,0.00013623],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002355269,"threshold_uncertainty_score":0.007827044,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02074680044134661,"score_gpt":0.2202355862224828,"score_spread":0.1994887857811362,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}