{"id":"W1965958252","doi":"10.1128/jb.186.10.3214-3223.2004","title":"<i>Salmonella enterica</i> Serovar Typhi Strains from Which SPI7, a 134-Kilobase Island with Genes for Vi Exopolysaccharide and Other Functions, Has Been Deleted","year":2004,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":58,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; National Institute of Allergy and Infectious Diseases; Centers for Disease Control and Prevention; National Institutes of Health","keywords":"Biology; Amplicon; Pathogenicity island; Gene; Microbiology; Bacteriophage; Lysogen; Genetics; Plasmid; Operon; Salmonella typhi; Serotype; Virulence; Salmonella enterica; Molecular biology; Polymerase chain reaction; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003295784,0.0002467135,0.0005965041,0.00003513597,0.0001759308,0.00005695166,0.0002335361,0.0002228135,0.0002012538],"category_scores_gemma":[0.00007167819,0.00009853444,0.0001305293,0.0001679174,0.0001739729,0.000127324,0.0000476294,0.0002085285,0.000009147375],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003766994,"about_ca_system_score_gemma":0.00005015904,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007456048,"about_ca_topic_score_gemma":0.002299605,"domain_scores_codex":[0.9984677,0.000157489,0.0005671309,0.0003317412,0.0001010456,0.0003748381],"domain_scores_gemma":[0.9987133,0.0003176952,0.0005083334,0.00008266026,0.0001915508,0.0001864865],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001156211,0.0001302628,0.08733479,0.000008883259,0.0002518941,0.00003506596,0.0001557533,0.00004791056,0.8997821,0.00005537553,0.0003808838,0.0106609],"study_design_scores_gemma":[0.005140631,0.00836656,0.8733914,0.0001724448,0.0004242446,0.002308735,0.001583213,0.00005607113,0.006128801,0.003789441,0.09771525,0.0009231376],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943768,0.0006210008,0.0006801639,0.003516555,0.0002742011,0.0001898512,0.0002738633,0.00002120988,0.00004632134],"genre_scores_gemma":[0.9961964,0.0001877915,0.001339269,0.001157784,0.001015004,0.00001171931,0.00005658046,0.00000483862,0.00003061899],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8936533,"threshold_uncertainty_score":0.4018118,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03168869169261137,"score_gpt":0.2348705198514187,"score_spread":0.2031818281588073,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}