{"id":"W1965958252","doi":"10.1128/jb.186.10.3214-3223.2004","title":"<i>Salmonella enterica</i> Serovar Typhi Strains from Which SPI7, a 134-Kilobase Island with Genes for Vi Exopolysaccharide and Other Functions, Has Been Deleted","year":2004,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":58,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; National Institute of Allergy and Infectious Diseases; Centers for Disease Control and Prevention; National Institutes of Health","keywords":"Biology; Amplicon; Pathogenicity island; Gene; Microbiology; Bacteriophage; Lysogen; Genetics; Plasmid; Operon; Salmonella typhi; Serotype; Virulence; Salmonella enterica; Molecular biology; Polymerase chain reaction; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001232788,0.0005104393,0.0002817742,0.0003767221,0.0001583237,0.0001857351,0.000225906,0.000211477,0.001640391],"category_scores_gemma":[0.0003042305,0.0001596902,0.0002515866,0.0003503035,0.0001998004,0.0001571792,0.0002709776,0.0003531039,0.0006175864],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000213051,"about_ca_system_score_gemma":0.0001745269,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001503132,"about_ca_topic_score_gemma":0.001808461,"domain_scores_codex":[0.9997565,0.00002906129,0.00003828463,0.00006222244,0.00006723539,0.00004672136],"domain_scores_gemma":[0.9997246,0.00003049092,0.00009668439,0.00004819878,0.00005559498,0.00004451018],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002203153,0.00004083461,0.002995545,0.00004420317,0.00001045956,0.00008599561,0.00002924824,0.00004048435,0.9940036,0.00006957803,0.0002494809,0.002210351],"study_design_scores_gemma":[0.00004268917,0.001145082,0.07560319,0.000017931,0.0000771486,0.002455967,0.0001820867,0.000790166,0.9101164,0.00009461997,0.009452716,0.00002208543],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9919114,0.0002215135,0.00295959,0.00008251356,0.00003378363,0.00007982553,0.003060451,0.0001330748,0.001517844],"genre_scores_gemma":[0.9667016,0.0003199549,0.01443104,0.0001658384,0.00001830254,0.0001504767,0.01517529,0.00008271506,0.002954755],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001640391,"threshold_uncertainty_score":0.005487621,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03168869169261137,"score_gpt":0.2348705198514187,"score_spread":0.2031818281588073,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}