{"id":"W1966050775","doi":"10.1371/journal.ppat.1004500","title":"Silencing by H-NS Potentiated the Evolution of Salmonella","year":2014,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":98,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Mutant; Pathogenicity island; Genetics; Gene; Salmonella; Virulence; Gene silencing; Missense mutation; Mutation; Genome; Loss function; Bacterial genome size; Phenotype; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000370704,0.0001058245,0.0001870014,0.000006412308,0.000137531,0.000009202435,0.0002373423,0.00009559973,0.0001315754],"category_scores_gemma":[0.0001877155,0.00003327885,0.00009884583,0.0002070241,0.00007295979,0.000031193,0.00005172146,0.00008620685,0.00003819215],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002502993,"about_ca_system_score_gemma":0.000004266643,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003068166,"about_ca_topic_score_gemma":0.00005849194,"domain_scores_codex":[0.9988825,0.000280683,0.0002386684,0.0002151018,0.0001363804,0.0002466955],"domain_scores_gemma":[0.9992842,0.0003756819,0.0001350923,0.00008815787,0.00006139292,0.00005548109],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000006754347,0.00004865091,0.03502588,0.000002847668,0.00001213912,3.394076e-7,0.00004097946,0.000006153087,0.9594585,0.0002185562,0.0007030474,0.004476208],"study_design_scores_gemma":[0.0002191753,0.0005206293,0.9058632,0.00004166554,0.0001140258,0.00001490852,0.001141879,0.003217928,0.08049233,0.003633777,0.004352954,0.0003874958],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976526,0.0002599026,0.00007984982,0.0005268138,0.0000829915,0.0001073791,0.00006707377,0.00004666051,0.001176756],"genre_scores_gemma":[0.9994447,0.00002884808,0.0000299294,0.0001840426,0.0001424265,0.000007757114,0.00004768521,9.924408e-7,0.0001135862],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8789661,"threshold_uncertainty_score":0.1440658,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0123738622931073,"score_gpt":0.1856105318430219,"score_spread":0.1732366695499146,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}