{"id":"W1966108249","doi":"10.1007/s00239-004-0178-5","title":"Single Nucleotide +1 Frameshifts in an Apparently FunctionalMitochondrial Cytochrome b Gene in Ants of the Genus Polyrhachis","year":2005,"lang":"en","type":"article","venue":"Journal of Molecular Evolution","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":50,"is_retracted":false,"has_abstract":false,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Biology; Gene; Cytochrome b; Genetics; Nucleotide; Genus; Phylogenetic tree; Zoology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003190285,0.00008648519,0.0001803191,0.00006042513,0.00005629421,0.00001663233,0.0002592219,0.00006630001,0.00002921251],"category_scores_gemma":[0.0001517491,0.00003423848,0.0001031642,0.0003802586,0.00006182038,0.0002065864,0.00006358971,0.0002273141,0.000003208487],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000201022,"about_ca_system_score_gemma":0.00003122843,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001629399,"about_ca_topic_score_gemma":0.001575092,"domain_scores_codex":[0.9985925,0.000209352,0.0003778432,0.0001163371,0.000499083,0.000204908],"domain_scores_gemma":[0.9995072,0.00005528435,0.0002269334,0.00004880721,0.0001046117,0.00005717758],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001232427,0.0002634517,0.009895334,0.000002062246,0.00001097372,0.00001608123,0.00004939803,0.0005869441,0.9835023,0.00001633765,0.0001049976,0.005428836],"study_design_scores_gemma":[0.0004519169,0.0003702761,0.9453039,0.00006521302,0.000008710259,0.00003850125,0.00009481197,0.0002385164,0.05208968,0.000300116,0.0009481187,0.00009023187],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981987,0.000745121,0.00002761686,0.0006751579,0.000141737,0.000122665,0.00003466934,0.000003172873,0.00005118579],"genre_scores_gemma":[0.9994062,0.0000374034,0.0001991605,0.00005244013,0.0002886349,0.000002046884,0.000004295269,9.235666e-7,0.00000887159],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9354086,"threshold_uncertainty_score":0.1396205,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02121600317871378,"score_gpt":0.2438444818632473,"score_spread":0.2226284786845336,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}