{"id":"W1966200846","doi":"10.2174/157016208785132554","title":"Systematic Analysis of Host Immunological Pressure on the Envelope Gene of Human Immunodeficiency Virus Type 1 by an Immunobioinformatics Approach","year":2008,"lang":"en","type":"article","venue":"Current HIV Research","topic":"Hepatitis C virus research","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"Los Alamos National Laboratory","keywords":"Human immunodeficiency virus (HIV); Virology; Host (biology); Biology; Envelope (radar); Type (biology); Gene; Genetics; Computer science; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003772135,0.0002419283,0.001068071,0.001036413,0.0004776357,0.00003576069,0.001115887,0.000170359,0.0004267909],"category_scores_gemma":[0.001636912,0.0001479016,0.0002642729,0.003507596,0.00119167,0.0001300883,0.0003667533,0.001248124,0.0001197681],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001307001,"about_ca_system_score_gemma":0.0003466067,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001807223,"about_ca_topic_score_gemma":0.000002348211,"domain_scores_codex":[0.9939714,0.001245719,0.00116094,0.0003681658,0.002556562,0.0006971832],"domain_scores_gemma":[0.995816,0.0006809325,0.0002711299,0.001753236,0.001324445,0.0001542586],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001672202,0.01518808,0.03708691,0.03296335,0.01021146,0.0000443691,0.0198422,0.0002746832,0.8632567,0.005519107,0.009864545,0.004076401],"study_design_scores_gemma":[0.01086838,0.02390184,0.3446591,0.01415478,0.007232699,0.0001524933,0.01426466,0.187465,0.3804647,0.0001284576,0.01369653,0.003011356],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9791906,0.01218011,0.0001465788,0.0000592744,0.00005657439,0.002029615,0.000245431,0.00003415762,0.006057669],"genre_scores_gemma":[0.9956937,0.003074646,0.0001154796,0.000007659645,0.00001919168,0.0001263771,0.0004133226,0.00002588332,0.0005237817],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.482792,"threshold_uncertainty_score":0.6031251,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1955996982789413,"score_gpt":0.4130184654744694,"score_spread":0.2174187671955281,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}