{"id":"W1966248317","doi":"10.1038/srep07063","title":"Splicing mutation analysis reveals previously unrecognized pathways in lymph node-invasive breast cancer","year":2014,"lang":"en","type":"article","venue":"Scientific Reports","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Compute Canada","keywords":"RNA splicing; Biology; Exon; Genetics; Exon skipping; Exome sequencing; Exome; Mutation; Breast cancer; Germline mutation; Alternative splicing; Gene; Cancer research; Computational biology; Cancer; RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003693427,0.0002491346,0.0002025363,0.001192218,0.0001729605,0.0003870244,0.0001829715,0.0003108789,0.0006468549],"category_scores_gemma":[0.0007894818,0.00009491127,0.0002087607,0.0007059866,0.0001922356,0.0001261032,0.0001694814,0.0001478246,0.0002506053],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001834449,"about_ca_system_score_gemma":0.0001860376,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005155017,"about_ca_topic_score_gemma":0.001059438,"domain_scores_codex":[0.9997949,0.0000354679,0.00003028567,0.00004961904,0.00006874497,0.00002103777],"domain_scores_gemma":[0.9997174,0.00009017422,0.00008841458,0.0000333087,0.00003256781,0.00003808234],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001024063,0.0000801927,0.3584059,0.0002048576,0.0001599114,0.005246963,0.0002239283,0.0009230661,0.6037145,0.000310867,0.0002770954,0.02942868],"study_design_scores_gemma":[0.0000445813,0.0003276148,0.8202745,0.00003764203,0.0002798606,0.01859598,0.0002006624,0.005047553,0.1516505,0.001083663,0.002438051,0.00001946014],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987264,0.0003385806,0.0004620372,0.00002533289,0.000002758931,0.000004447416,0.0001809857,0.00002669323,0.0002327271],"genre_scores_gemma":[0.9979308,0.0003393587,0.001131399,0.00002920761,0.000003919835,0.000006276076,0.0003940777,0.000007973206,0.0001570576],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001192218,"threshold_uncertainty_score":0.002163947,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01223967543579481,"score_gpt":0.2709319726592658,"score_spread":0.258692297223471,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}