{"id":"W1966629749","doi":"10.1371/journal.pone.0020024","title":"The Salmonella enterica PhoP Directly Activates the Horizontally Acquired SPI-2 Gene sseL and Is Functionally Different from a S. bongori Ortholog","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; Canadian Association of Gastroenterology; Ministry of Health, State of Israel; Howard Hughes Medical Institute","keywords":"Regulon; Salmonella enterica; Pathogenicity island; Virulence; Effector; Biology; Gene; Genetics; Operon; Regulation of gene expression; Cell biology; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001140485,0.0005649765,0.0001721879,0.0001982454,0.0001225336,0.0002225088,0.0001126046,0.0002394993,0.001523327],"category_scores_gemma":[0.0001074297,0.0001318653,0.0002572391,0.00009298664,0.0002840184,0.0001361776,0.0004791629,0.0003960923,0.0003652317],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002159381,"about_ca_system_score_gemma":0.0001493483,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005467688,"about_ca_topic_score_gemma":0.0006923404,"domain_scores_codex":[0.999878,0.00001764862,0.000006317621,0.00002680298,0.00003192743,0.00003922163],"domain_scores_gemma":[0.9999217,0.00001845794,0.00001345163,0.00001118345,0.00000751337,0.00002771457],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005942614,0.0000171416,0.0003503607,0.00002527225,0.000001731433,0.00004600491,0.00001117355,0.0000187036,0.9988682,0.00004936604,0.00001337977,0.0005391602],"study_design_scores_gemma":[0.00001611797,0.0004380622,0.03252589,0.00001110448,0.00001211786,0.0005694999,0.0001374596,0.0009158914,0.9629782,0.0001085856,0.002277434,0.000009630931],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969823,0.0003173186,0.001006301,0.00008172672,0.00002092731,0.00001279879,0.0002052757,0.00004581569,0.001327547],"genre_scores_gemma":[0.9970811,0.0001231892,0.0009114244,0.00006087662,0.000005056351,0.00001341335,0.0004598748,0.0000148228,0.001330145],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001523327,"threshold_uncertainty_score":0.005096018,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06699680184562955,"score_gpt":0.1935360818875118,"score_spread":0.1265392800418822,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}