{"id":"W1967598681","doi":"10.1101/gr.091546.109","title":"Comparative genomics of protoploid <i>Saccharomycetaceae</i>","year":2009,"lang":"en","type":"article","venue":"Genome Research","topic":"Yeasts and Rust Fungi Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":211,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Nautical Research Society","funders":"Agence Nationale de la Recherche","keywords":"Biology; Synteny; Genome; Genetics; Kluyveromyces lactis; Lineage (genetic); Gene duplication; Genome evolution; Comparative genomics; Evolutionary biology; Kluyveromyces; Genomics; Saccharomyces cerevisiae; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004570972,0.00009969866,0.0001915959,0.00007818281,0.0001290787,0.00001485215,0.0002485706,0.00007470846,0.00004138277],"category_scores_gemma":[0.00002844459,0.00008363921,0.00006513645,0.0001812846,0.0001472885,0.000001971185,0.0001492351,0.0001429079,0.00004919024],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001868701,"about_ca_system_score_gemma":0.0001072628,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007340286,"about_ca_topic_score_gemma":0.000004820097,"domain_scores_codex":[0.9988964,0.00008475427,0.0001705075,0.0002609324,0.0002364346,0.0003509379],"domain_scores_gemma":[0.9992838,0.0000102196,0.00004007432,0.0003106091,0.00028201,0.00007331117],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007632664,0.00009123433,0.0002239938,0.00001631636,0.00004699139,0.000001821444,0.00026722,0.00002484795,0.9967257,0.000179993,0.001722964,0.0006225423],"study_design_scores_gemma":[0.0005967297,0.001622347,0.0154088,0.00001461816,0.000008831069,0.000012215,0.0005960263,0.00001486055,0.7610005,0.0004529127,0.2200335,0.0002386132],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9721784,0.004908886,0.0001126406,0.0003953377,0.00003123168,0.0007645471,0.00003117276,0.000007831442,0.02156996],"genre_scores_gemma":[0.9964215,0.0008539257,0.000560526,0.00004979999,0.0001994305,0.00003409606,0.00003062265,0.000008567835,0.001841512],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2357252,"threshold_uncertainty_score":0.3410708,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0637711639517722,"score_gpt":0.3654396975534254,"score_spread":0.3016685336016532,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}