{"id":"W1967701714","doi":"10.1128/aem.01288-09","title":"Lineage and Host Source Are Both Correlated with Levels of Shiga Toxin 2 Production by <i>Escherichia coli</i> O157:H7 Strains","year":2009,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Lethbridge; Public Health Agency of Canada","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Health Canada; Public Health Agency; Public Health Agency of Canada","keywords":"Biology; Shiga toxin; Prophage; Escherichia coli; Virulence; STX2; Microbiology; Lineage (genetic); Genotype; Shiga-like toxin; Gene; Pathogen; Toxin; Genetics; Bacteriophage","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008671302,0.0001950325,0.000222672,0.00001901954,0.00009844082,0.000007760076,0.00007679539,0.0001606802,0.000008638503],"category_scores_gemma":[0.000006973375,0.0001654949,0.00002113213,0.00004569851,0.0005036719,0.000003808016,0.00009889908,0.0001393864,0.000001368964],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001290158,"about_ca_system_score_gemma":0.00001157254,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006035375,"about_ca_topic_score_gemma":0.000009381923,"domain_scores_codex":[0.9990839,0.00003695752,0.0001596921,0.0004237846,0.00004193113,0.0002537098],"domain_scores_gemma":[0.9996596,0.000008182979,0.0001018473,0.0001599902,0.000005255798,0.0000651366],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000128421,0.0001278264,0.003000889,0.00001404247,0.00006707839,9.095143e-7,0.0000950444,0.000007256478,0.9950135,0.000007879813,0.0008319864,0.0007052142],"study_design_scores_gemma":[0.001204715,0.001014981,0.0805118,0.00001506778,0.00003511326,0.00003718169,0.0007356751,0.00000768238,0.9047376,0.000004586431,0.01138666,0.0003089466],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976929,0.001291175,0.0001568957,0.0001709519,0.00001813044,0.0003093295,0.0001706876,0.000009396875,0.0001805725],"genre_scores_gemma":[0.9976913,0.0008232059,0.0003275287,0.0004183923,0.00004164809,0.00001501833,0.0001682783,0.00001625721,0.0004983699],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09027586,"threshold_uncertainty_score":0.6748686,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004551419005233738,"score_gpt":0.1879963246186682,"score_spread":0.1834449056134345,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}