{"id":"W1967779392","doi":"10.1093/nar/gkv401","title":"IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis: Figure 1.","year":2015,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":274,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; McMaster University; Simon Fraser University","funders":"Cisco Systems Canada; SFU Community Trust Endowment Fund; Simon Fraser University; Genome British Columbia; McMaster University; Cystic Fibrosis Canada; Canadian Institutes of Health Research; Genome Canada; Cisco Systems","keywords":"Genome; Biology; Visualization; Computational biology; Gene; Bacterial genome size; Genetics; ENCODE; Virulence; Data mining; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001693531,0.00216052,0.001642507,0.00258132,0.0006355503,0.002439298,0.003437292,0.001328416,0.1160384],"category_scores_gemma":[0.003443194,0.001436719,0.001875227,0.001533628,0.000402656,0.002554736,0.002581641,0.003127033,0.03233812],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005307189,"about_ca_system_score_gemma":0.001352596,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004901971,"about_ca_topic_score_gemma":0.006718339,"domain_scores_codex":[0.9993544,0.00009891215,0.00004594503,0.0001436892,0.000270463,0.00008650489],"domain_scores_gemma":[0.998555,0.0005968805,0.000098796,0.0002156091,0.0002923264,0.0002413926],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001101904,0.0002230774,0.00339078,0.001559023,0.0003629088,0.000621348,0.0005906508,0.003740303,0.04617561,0.004329133,0.7598004,0.1781048],"study_design_scores_gemma":[0.0008527767,0.0002204869,0.008277228,0.0004631577,0.00015967,0.001378789,0.0002005329,0.1129029,0.07017623,0.01125687,0.7935238,0.0005875902],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.005899968,0.0006295826,0.3093644,0.0006556176,0.0004029878,0.0003995807,0.05093024,0.6237814,0.007936182],"genre_scores_gemma":[0.04205171,0.0009792526,0.6836404,0.001341871,0.0002146461,0.001747588,0.1181196,0.1241069,0.02779822],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.1160384,"threshold_uncertainty_score":0.3881872,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0378107861070302,"score_gpt":0.3574440765646696,"score_spread":0.3196332904576394,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}