{"id":"W1967917710","doi":"10.1128/jcm.00042-08","title":"Multilocus Sequence Typing of <i>Campylobacter jejuni</i> Isolates from Humans, Chickens, Raw Milk, and Environmental Water in Quebec, Canada","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":137,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"University of Oxford","keywords":"Multilocus sequence typing; Typing; Biology; Campylobacter jejuni; Pulsed-field gel electrophoresis; Molecular epidemiology; Microbiology; Raw milk; Campylobacter; Genotype; Veterinary medicine; Genetics; Bacteria; Gene; Food science; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005927053,0.0001793463,0.0008560657,0.00001942743,0.00006354947,0.000005425418,0.0002952357,0.0002965034,0.0002896937],"category_scores_gemma":[0.0001576457,0.00006869574,0.0001686442,0.00004804316,0.0004375917,0.00008715295,0.0001107217,0.0004592955,0.000005261031],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000456042,"about_ca_system_score_gemma":0.00005457198,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.1921948,"about_ca_topic_score_gemma":0.5185113,"domain_scores_codex":[0.9972684,0.0005612571,0.001508888,0.0002808454,0.00004425046,0.0003363063],"domain_scores_gemma":[0.9979553,0.001262847,0.0005410742,0.00007249576,0.00003729793,0.0001309866],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001827985,0.0001017412,0.3805673,0.000002192676,0.00003696293,0.00003635036,0.00007302712,0.000002882038,0.6155378,0.00000157172,0.0007090257,0.002748316],"study_design_scores_gemma":[0.001032708,0.0005003634,0.9501284,0.00005536718,0.00002819383,0.0002544641,0.0002535681,0.00001113216,0.009861434,0.0002147513,0.0374094,0.000250239],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970198,0.0009596716,0.000001170275,0.001364906,0.0004914792,0.00007371585,0.00007016138,0.000003391623,0.00001574594],"genre_scores_gemma":[0.996798,0.001378576,0.00008891781,0.001275105,0.0002924659,6.93221e-7,0.00008043282,0.00000170512,0.00008414996],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6056764,"threshold_uncertainty_score":0.8131844,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03861323004603966,"score_gpt":0.261483109579373,"score_spread":0.2228698795333333,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}