{"id":"W1967917710","doi":"10.1128/jcm.00042-08","title":"Multilocus Sequence Typing of <i>Campylobacter jejuni</i> Isolates from Humans, Chickens, Raw Milk, and Environmental Water in Quebec, Canada","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":137,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"University of Oxford","keywords":"Multilocus sequence typing; Typing; Biology; Campylobacter jejuni; Pulsed-field gel electrophoresis; Molecular epidemiology; Microbiology; Raw milk; Campylobacter; Genotype; Veterinary medicine; Genetics; Bacteria; Gene; Food science; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004492752,0.0002930427,0.0002564687,0.000916078,0.001369177,0.0006427125,0.0005168693,0.0002633086,0.0006025695],"category_scores_gemma":[0.0009074507,0.0001945612,0.0001877747,0.001280339,0.0005488139,0.0001658457,0.0002924552,0.0002745057,0.0001032905],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01028457,"about_ca_system_score_gemma":0.005849919,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.97133,"about_ca_topic_score_gemma":0.9825801,"domain_scores_codex":[0.9995485,0.00003846064,0.00002562063,0.00009743864,0.0001886748,0.0001013785],"domain_scores_gemma":[0.9990896,0.00007672318,0.0001255531,0.00002208401,0.0004875462,0.0001984359],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002129635,0.00005093581,0.9584217,0.0001146934,0.0000767897,0.000499082,0.001480739,0.0005599841,0.01498224,0.00007418931,0.00163603,0.02189082],"study_design_scores_gemma":[0.000007124665,0.00004763506,0.9964111,0.00002229863,0.00001886568,0.0001648507,0.0005775518,0.0004495412,0.000694152,0.000006740803,0.001592126,0.000008015244],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968912,0.0006820076,0.0002508352,0.000128965,0.00000722791,0.00003530046,0.001027364,0.000009961996,0.0009670855],"genre_scores_gemma":[0.9971826,0.0003119321,0.0005459377,0.00008684857,0.000005443883,0.00001013268,0.001271134,0.000004938254,0.0005810194],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02867001,"threshold_uncertainty_score":0.07462013,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03861323004603966,"score_gpt":0.261483109579373,"score_spread":0.2228698795333333,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}