{"id":"W1968018206","doi":"10.1371/journal.ppat.1000036","title":"A Novel Secretion Pathway of Salmonella enterica Acts as an Antivirulence Modulator during Salmonellosis","year":2008,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":51,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Children's Hospital; University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; University of British Columbia; Canadian Association of Gastroenterology; AstraZeneca; Howard Hughes Medical Institute","keywords":"Salmonella enterica; Salmonella; Secretion; Microbiology; Biology; Intimin; Bacterial outer membrane; Type three secretion system; Pathogenicity island; Enterobacteriaceae; Bacteria; Virulence; Escherichia coli; Gene; Genetics; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001911685,0.0002689828,0.000464475,0.00003163505,0.0002441449,0.00001338763,0.0003493721,0.0002037146,0.0002117813],"category_scores_gemma":[0.0001420647,0.0001287846,0.0001898118,0.0003610066,0.0001581254,0.0001962051,0.0001134433,0.0001472421,0.00007752838],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003199414,"about_ca_system_score_gemma":0.00001688174,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001698352,"about_ca_topic_score_gemma":0.0000260692,"domain_scores_codex":[0.9979585,0.000186081,0.0004653993,0.0005999706,0.0003017186,0.0004883624],"domain_scores_gemma":[0.9990293,0.0001664921,0.0002693585,0.0001864084,0.0001182499,0.0002302058],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007662336,0.0004523923,0.08813973,0.00001347353,0.0000239672,0.000035041,0.0002476136,0.000006751749,0.909945,0.00004614577,0.00000607311,0.001007265],"study_design_scores_gemma":[0.0002047873,0.0004501521,0.692394,0.00004178663,0.00002215013,0.0001557864,0.0001568206,0.0002436182,0.3057418,0.0001172014,0.0001702832,0.0003015277],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986605,0.0001012032,0.00001547634,0.000100932,0.00009831726,0.0002312031,0.0001783136,0.0001205454,0.0004934893],"genre_scores_gemma":[0.9987435,0.000276593,0.0003911263,0.0001354643,0.0002357901,0.00002237029,0.00009298968,0.000004525488,0.00009763666],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6042543,"threshold_uncertainty_score":0.5251684,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04262985238900787,"score_gpt":0.224045251041938,"score_spread":0.1814153986529301,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}