{"id":"W1968062083","doi":"10.1186/1471-2164-15-713","title":"High resolution assembly and characterization of genomes of Canadian isolates of Salmonella Enteritidis","year":2014,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"Ministry of Agriculture, Food and Rural Affairs; Public Health Agency; Public Health Agency of Canada; Ontario Ministry of Agriculture, Food and Rural Affairs; Canadian Food Inspection Agency; McGill University","keywords":"Prophage; Genome; Biology; Genetics; Whole genome sequencing; Reference genome; Genome project; Phylogenetic tree; Comparative genomics; Gene; Genomics; Bacteriophage; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002352944,0.0005059032,0.0003878078,0.001213337,0.001060242,0.0006329456,0.0004272936,0.0003003952,0.0009151925],"category_scores_gemma":[0.0006877384,0.0002477244,0.0005421829,0.001904779,0.0002771335,0.0001795593,0.000509231,0.0006155229,0.0003974237],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003035628,"about_ca_system_score_gemma":0.00472725,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.4262206,"about_ca_topic_score_gemma":0.5675671,"domain_scores_codex":[0.9996883,0.00001078955,0.000009854472,0.00009170285,0.0001213295,0.00007808443],"domain_scores_gemma":[0.9995763,0.00003776678,0.00005718816,0.00003341168,0.0002298796,0.00006551155],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005849235,0.00006945346,0.0198518,0.0003474893,0.00006314294,0.0002404343,0.0007887251,0.002266695,0.9559202,0.0003386695,0.0009193594,0.01860914],"study_design_scores_gemma":[0.00006608455,0.0004291087,0.7344427,0.00006768596,0.0002275048,0.001115131,0.001227822,0.00937803,0.2087067,0.0003093741,0.04394814,0.00008169642],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9705876,0.000909165,0.008243803,0.0001242878,0.00001935267,0.0001409344,0.01633762,0.0003054877,0.003331762],"genre_scores_gemma":[0.8676429,0.001147487,0.05941426,0.0001496528,0.00001204886,0.0001545142,0.06611685,0.0002844864,0.005077866],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5737795,"threshold_uncertainty_score":0.8474793,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02270973251720166,"score_gpt":0.2015934226846604,"score_spread":0.1788836901674587,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}