{"id":"W1968177952","doi":"10.1128/jcm.42.8.3686-3695.2004","title":"Use of <i>tuf</i> Sequences for Genus-Specific PCR Detection and Phylogenetic Analysis of 28 Streptococcal Species","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":121,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"National Institute of Dental and Craniofacial Research; National Institute of Allergy and Infectious Diseases; Canada Research Chairs","keywords":"Phylogenetic tree; Biology; Phylogenetics; Polymerase chain reaction; Genus; Evolutionary biology; Genetics; Zoology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003424297,0.0001184108,0.001017616,0.0003031588,0.00003248967,0.000006452035,0.00005517252,0.0001978737,0.00005362388],"category_scores_gemma":[0.000310703,0.00008263878,0.0006566951,0.0003123028,0.0004194384,0.00004683274,0.00002086518,0.0001752322,8.42705e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000347527,"about_ca_system_score_gemma":0.00007858932,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002360664,"about_ca_topic_score_gemma":0.0000518691,"domain_scores_codex":[0.9981754,0.0000722418,0.001387106,0.0001792827,0.00004758856,0.0001383928],"domain_scores_gemma":[0.9977034,0.0007080611,0.0009328935,0.0001544594,0.0004029919,0.00009814373],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009153775,0.000721201,0.4448731,0.00003187386,0.002925676,0.000009821264,0.00004097908,0.0002729764,0.5383086,0.00007128248,0.00003817805,0.01179093],"study_design_scores_gemma":[0.005255363,0.007854335,0.8478768,0.0001088159,0.003636428,0.000297173,0.00009268864,0.00002243134,0.1249547,0.0004076199,0.009371573,0.0001219554],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969342,0.0004923827,0.001787347,0.0001408414,0.0002688642,0.0002785954,0.00007586283,0.000003467345,0.00001838307],"genre_scores_gemma":[0.9955614,0.0009177662,0.003246842,0.00005554454,0.0001599509,0.000004611821,0.00001052389,0.000007068987,0.00003626883],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4133539,"threshold_uncertainty_score":0.3369912,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1194420113675583,"score_gpt":0.3766835671361425,"score_spread":0.2572415557685842,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}