{"id":"W1968207397","doi":"10.1089/aid.2008.0162","title":"The Polymorphic Nature of HIV Type 1 <i>env</i> V4 Affects the Patterns of Potential N-Glycosylation Sites in Proviral DNA at the Intrahost Level","year":2009,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"","keywords":"Provirus; Biology; Indel; Genetics; DNA; RNA; Glycosylation; Gene; Genotype; Single-nucleotide polymorphism; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00115233,0.0001422344,0.0002038828,0.0001589792,0.0008210763,0.00004982903,0.0004309127,0.0001797228,0.0001415554],"category_scores_gemma":[0.0002804071,0.00006654048,0.00006557681,0.0002853445,0.0009311881,0.00008451553,0.0002076119,0.0008427259,0.00005950188],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000580351,"about_ca_system_score_gemma":0.0001023276,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005189898,"about_ca_topic_score_gemma":0.00241432,"domain_scores_codex":[0.9979666,0.0007212518,0.000234647,0.000242008,0.0002370944,0.000598344],"domain_scores_gemma":[0.998574,0.0007147018,0.00008748235,0.0004272838,0.00016152,0.00003498071],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0015835,0.0003438953,0.3541294,0.000044936,0.0002029118,0.00002110966,0.0006403786,0.000001425107,0.6197696,0.006323182,0.006794171,0.01014552],"study_design_scores_gemma":[0.001278086,0.003713846,0.8282508,0.00005351003,0.00001784166,0.00001600472,0.0003332666,7.110363e-7,0.1622608,0.0008662045,0.00311708,0.00009180996],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9916437,0.006117637,0.000002024155,0.001147311,0.00004684161,0.0005604698,0.0001669372,0.000008722671,0.0003063333],"genre_scores_gemma":[0.9961873,0.0006277674,0.000002646835,0.00005731465,0.00004241499,0.00001992433,0.0001272895,0.000009710241,0.002925614],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4741215,"threshold_uncertainty_score":0.6315138,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03744548746669039,"score_gpt":0.323089160411919,"score_spread":0.2856436729452286,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}