{"id":"W1968207397","doi":"10.1089/aid.2008.0162","title":"The Polymorphic Nature of HIV Type 1 <i>env</i> V4 Affects the Patterns of Potential N-Glycosylation Sites in Proviral DNA at the Intrahost Level","year":2009,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"","keywords":"Provirus; Biology; Indel; Genetics; DNA; RNA; Glycosylation; Gene; Genotype; Single-nucleotide polymorphism; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001996667,0.0001592526,0.0001406643,0.0002073585,0.0001470036,0.0003298865,0.0001243157,0.0002079872,0.001057617],"category_scores_gemma":[0.0005167112,0.0001050718,0.0001442374,0.0001499046,0.0002452249,0.0001554911,0.0001460719,0.0002314678,0.0001718925],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000110092,"about_ca_system_score_gemma":0.00007578029,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002607984,"about_ca_topic_score_gemma":0.0002627055,"domain_scores_codex":[0.9997445,0.0001052792,0.00001450264,0.00006299346,0.00002854776,0.00004407388],"domain_scores_gemma":[0.9998056,0.00008776608,0.00004566838,0.00002499797,0.00001379016,0.00002215057],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004915252,0.00002921428,0.03191338,0.00002092451,0.00003797513,0.0001708737,0.00005991867,0.0001673518,0.9625847,0.00009197264,0.00002509819,0.004407012],"study_design_scores_gemma":[0.00003633885,0.001617305,0.4721415,0.00001402203,0.0001338061,0.00427214,0.0002854181,0.002626593,0.5167114,0.0005491096,0.001588751,0.00002369906],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993209,0.00007459632,0.0003872725,0.000007820942,0.000001163338,0.000002592073,0.000028942,0.000003418124,0.0001733438],"genre_scores_gemma":[0.9993986,0.00003651374,0.0003371984,0.000007595409,0.00000214242,0.000003457531,0.00006771612,0.000004871614,0.0001419164],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001057617,"threshold_uncertainty_score":0.003538132,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03744548746669039,"score_gpt":0.323089160411919,"score_spread":0.2856436729452286,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}