{"id":"W1968615839","doi":"10.1038/nprot.2007.59","title":"Sequencing complete mitochondrial and plastid genomes","year":2007,"lang":"en","type":"article","venue":"Nature Protocols","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":89,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université de Montréal; Canadian Institute for Advanced Research","funders":"","keywords":"Genome; Biology; Heteroplasmy; Computational biology; Mitochondrial DNA; Genomics; DNA sequencing; Genetics; Evolutionary biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001476198,0.0001402895,0.0001293824,0.0000306094,0.0001063859,0.00002532622,0.0001185868,0.0002429928,0.00000432319],"category_scores_gemma":[0.00004998798,0.000124127,0.00004389375,0.00004632408,0.000066791,5.717255e-7,0.0001242802,0.0001749689,0.000002818796],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000139428,"about_ca_system_score_gemma":0.00004178661,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004102066,"about_ca_topic_score_gemma":0.00003298812,"domain_scores_codex":[0.9991963,0.00001640487,0.0001551508,0.0002944065,0.00009511928,0.0002426437],"domain_scores_gemma":[0.9995989,0.00002008156,0.00005761325,0.0001847391,0.00006677174,0.00007191243],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001435134,0.000009957082,0.004881566,0.00001846319,0.00003809024,0.000003797003,0.00004178687,0.000005307298,0.9914162,0.0001711502,0.0008884807,0.00238168],"study_design_scores_gemma":[0.001406823,0.0004942737,0.03019664,0.00002988693,0.00001393865,0.00004455009,0.00006967244,0.00001152585,0.2777314,0.0003518996,0.6892821,0.0003672847],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.959541,0.002932138,0.0009795193,0.0001395745,0.0003270559,0.0300633,0.00005853945,0.0000134938,0.00594538],"genre_scores_gemma":[0.9828945,0.00003462977,0.009854932,0.0005074915,0.001119371,0.005292058,0.00002164224,0.00002713764,0.0002482393],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7136848,"threshold_uncertainty_score":0.5061751,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01708691119831738,"score_gpt":0.2917854692970592,"score_spread":0.2746985580987418,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}