{"id":"W1968702293","doi":"10.1038/onc.2011.386","title":"An integrated genomic approach identifies ARID1A as a candidate tumor-suppressor gene in breast cancer","year":2011,"lang":"en","type":"article","venue":"Oncogene","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":125,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University Health Centre; McGill University; Jewish General Hospital","funders":"","keywords":"Biology; ARID1A; Cancer research; Gene; Tumor suppressor gene; Genetics; Breast cancer; SWI/SNF; Nonsense mutation; Phenotype; Cancer; Locus (genetics); Candidate gene; Chromatin remodeling; Carcinogenesis; Molecular biology; Chromatin; Mutation; Missense mutation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001911763,0.0003577349,0.0004122721,0.0009457596,0.0003141488,0.0004115657,0.0005362082,0.0003379276,0.002035024],"category_scores_gemma":[0.0002252144,0.0003379815,0.000456387,0.0004393947,0.0002968985,0.0001995186,0.0003265528,0.0006141599,0.0004615436],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003875715,"about_ca_system_score_gemma":0.0002630173,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007114517,"about_ca_topic_score_gemma":0.001511064,"domain_scores_codex":[0.9998574,0.00002004201,0.000009827964,0.00005223111,0.00003348183,0.00002702014],"domain_scores_gemma":[0.9998879,0.0000371256,0.00002399177,0.00001217781,0.0000099616,0.00002879149],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003299975,0.0000307852,0.0009863841,0.00003466773,0.00002530515,0.0001545825,0.00001013341,0.0001630713,0.9955124,0.0002432106,0.00006413904,0.002445164],"study_design_scores_gemma":[0.0001502858,0.000539344,0.03012763,0.00001248303,0.0003769651,0.003004323,0.0001326906,0.006752675,0.9513981,0.0006707681,0.006815542,0.00001917463],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9736954,0.003318215,0.01802066,0.0003428381,0.0001120298,0.00008869773,0.001463946,0.0002393951,0.002718962],"genre_scores_gemma":[0.9864237,0.0006830437,0.009976329,0.00008923193,0.00002047215,0.00003621285,0.001200337,0.00002989608,0.00154076],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002035024,"threshold_uncertainty_score":0.006807804,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01428355430200249,"score_gpt":0.2593861123300636,"score_spread":0.2451025580280611,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}