{"id":"W1968702293","doi":"10.1038/onc.2011.386","title":"An integrated genomic approach identifies ARID1A as a candidate tumor-suppressor gene in breast cancer","year":2011,"lang":"en","type":"article","venue":"Oncogene","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":125,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University Health Centre; McGill University; Jewish General Hospital","funders":"","keywords":"Biology; ARID1A; Cancer research; Gene; Tumor suppressor gene; Genetics; Breast cancer; SWI/SNF; Nonsense mutation; Phenotype; Cancer; Locus (genetics); Candidate gene; Chromatin remodeling; Carcinogenesis; Molecular biology; Chromatin; Mutation; Missense mutation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001517142,0.0002034395,0.0001978657,0.00005820743,0.00005709952,0.00003086521,0.0002962828,0.0001220473,0.0001856365],"category_scores_gemma":[0.000006590372,0.0001869274,0.00006903506,0.0001123051,0.00006822056,0.000007966168,0.00007304366,0.0001080778,0.00001772554],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006498289,"about_ca_system_score_gemma":0.0002534488,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005855579,"about_ca_topic_score_gemma":0.0008667205,"domain_scores_codex":[0.998785,0.00006534787,0.0002518808,0.0004833818,0.0001100429,0.0003043177],"domain_scores_gemma":[0.9993009,0.000001778087,0.00008702906,0.0004185482,0.00007777094,0.0001139629],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002168174,0.0001496794,0.002019847,0.00001803477,0.00005197162,0.00001319931,0.0003067135,0.0005556679,0.9942218,0.000005366547,0.0003415855,0.002099331],"study_design_scores_gemma":[0.0009809289,0.0001142941,0.00669659,0.00003124243,0.00004115776,0.0001849632,0.0003160618,0.002578522,0.9871849,0.00006991058,0.001383996,0.00041745],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962079,0.001211714,0.0006266577,0.00002194816,0.0001650096,0.0001567908,0.0001835582,0.00002335991,0.001403075],"genre_scores_gemma":[0.9967533,0.0003174238,0.001639182,0.0002471347,0.0002174356,0.0000954476,0.0002789076,0.00004189465,0.0004092238],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007036903,"threshold_uncertainty_score":0.8851923,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01428355430200249,"score_gpt":0.2593861123300636,"score_spread":0.2451025580280611,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}