{"id":"W1968956628","doi":"10.1104/pp.112.213231","title":"A Developmental Transcriptional Network for Maize Defines Coexpression Modules      ","year":2013,"lang":"en","type":"article","venue":"PLANT PHYSIOLOGY","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":97,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Gene; Gene expression; Genetics; Genome; Regulation of gene expression; Transcriptional regulation; Gene expression profiling; Computational biology; Gene regulatory network","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008988092,0.0001252847,0.0001759727,0.000008175459,0.0002001799,0.00001749677,0.0002223886,0.0001319506,0.0005450125],"category_scores_gemma":[0.00002854386,0.00004659437,0.000070546,0.00007438464,0.00009767131,0.00005376544,0.00005293943,0.00008634772,0.000152962],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000011394,"about_ca_system_score_gemma":0.000008810222,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007858492,"about_ca_topic_score_gemma":0.00008661886,"domain_scores_codex":[0.9989652,0.00008361749,0.0001476744,0.0002879198,0.00008324557,0.0004323536],"domain_scores_gemma":[0.9994832,0.0003378555,0.00003804006,0.00002320118,0.00004460292,0.0000731233],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009963194,0.00003641833,0.0009861663,0.000004425969,0.00001792818,0.00000103557,0.000008142913,0.00001058816,0.9793913,0.0008253402,0.01492617,0.003692868],"study_design_scores_gemma":[0.0004703692,0.000392223,0.9072142,0.00003430615,0.000009265609,0.00009820542,0.0000768485,0.0009537186,0.0195167,0.01830125,0.05253906,0.0003939099],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979482,0.0001244047,0.00003915442,0.0007580917,0.00009388856,0.000389941,0.0004537714,0.00004492604,0.0001476312],"genre_scores_gemma":[0.9943048,0.00005354462,0.00201333,0.000492253,0.0003356095,0.0001890417,0.002435528,0.00000113381,0.0001748094],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9598746,"threshold_uncertainty_score":0.5967506,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02957719073523293,"score_gpt":0.2221817463054009,"score_spread":0.1926045555701679,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}