{"id":"W1969262464","doi":"10.1007/s12010-008-8241-0","title":"Serine Hydroxamate and the Transcriptome of High Cell Density Recombinant Escherichia coli MG1655","year":2008,"lang":"en","type":"article","venue":"Applied Biochemistry and Biotechnology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":false,"ca_institutions":"Boehringer Ingelheim (Canada)","funders":"National Science Foundation","keywords":"Recombinant DNA; Escherichia coli; Serine; Biochemistry; Biology; Serine protease; Stringent response; Transcriptome; Gene; Gene expression; Enzyme; Protease","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001741139,0.0002718125,0.0003955002,0.00004199437,0.0001744459,0.000009175819,0.0003009578,0.0009832758,0.000007659681],"category_scores_gemma":[0.00002153419,0.000201485,0.00006333046,0.0001668587,0.002050154,0.000001889972,0.0003369971,0.0002684205,0.000001648654],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006048082,"about_ca_system_score_gemma":0.00004208742,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005727408,"about_ca_topic_score_gemma":0.000006981626,"domain_scores_codex":[0.9987094,0.00002541558,0.0003277865,0.0005421528,0.00008004724,0.0003151664],"domain_scores_gemma":[0.9991854,0.00001504462,0.0001683521,0.0005260101,0.0000410527,0.00006414048],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004547647,0.00008024552,0.00009263111,0.00006387478,0.00005191072,0.000004412499,0.00002208078,4.473613e-7,0.9963883,0.001381861,0.0001282871,0.001331194],"study_design_scores_gemma":[0.002239339,0.0002230697,0.0007238279,0.0000060477,0.00003949288,0.0001523439,0.00007209571,0.00001015774,0.9917109,0.0006422976,0.003933424,0.0002470009],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99651,0.001053147,0.00009854564,0.001690527,0.00009752326,0.0002610341,0.00002094212,0.00004144468,0.0002268906],"genre_scores_gemma":[0.9926753,0.005856407,0.0009181914,0.0001883431,0.00005967816,0.0000267568,0.00004852451,0.00001991188,0.0002068834],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00480326,"threshold_uncertainty_score":0.8216319,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003924044371876342,"score_gpt":0.1705825404514219,"score_spread":0.1666584960795456,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}