{"id":"W1969595164","doi":"10.1089/cmb.2007.a005","title":"Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution","year":2007,"lang":"en","type":"article","venue":"Journal of Computational Biology","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Canadian Institute for Advanced Research","keywords":"Phylogenomics; Biology; Evolutionary biology; Botany; Phylogenetics; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003121427,0.0000800196,0.0001461986,0.0002362436,0.00001929966,0.000007542561,0.0001271982,0.00006756377,5.382695e-7],"category_scores_gemma":[0.00002521559,0.00006827416,0.00002516834,0.0001345756,0.00004007296,0.000004605668,0.00005521477,0.00007301179,5.672806e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004658232,"about_ca_system_score_gemma":0.00006004491,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006828384,"about_ca_topic_score_gemma":0.00004528077,"domain_scores_codex":[0.9993535,0.00003346886,0.000270069,0.000146402,0.00007505384,0.0001215591],"domain_scores_gemma":[0.9994755,0.00002217418,0.0001570806,0.0001042458,0.0001595438,0.00008139753],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001510869,0.0004222785,0.3321772,0.00003000792,0.00014648,0.000009286768,0.0001603907,0.1447694,0.4498997,0.003987265,0.00002574435,0.06686143],"study_design_scores_gemma":[0.00173319,0.003433606,0.936772,0.00002068072,0.00002216668,0.0001545529,0.00006392464,0.03313861,0.003573624,0.02080481,0.00009826529,0.0001845507],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.65316,0.0001891424,0.3464387,0.00007672085,0.00001763486,0.00008671315,0.000005355294,0.00000116197,0.00002452879],"genre_scores_gemma":[0.9661236,0.00001813008,0.03361306,0.0001126283,0.00008516489,0.000002533023,0.0000324392,0.000006405345,0.000006011462],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6045948,"threshold_uncertainty_score":0.278414,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009398791714588465,"score_gpt":0.264439563613116,"score_spread":0.2550407718985275,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}