{"id":"W1969647281","doi":"10.1093/nar/gks427","title":"Savant Genome Browser 2: visualization and analysis for population-scale genomics","year":2012,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Mitacs","keywords":"Visualization; Computer science; Genome browser; Plug-in; Biology; Genome; Genomics; Data visualization; Population; Computational biology; Data mining; Genetics; Programming language","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004286551,0.003025129,0.001812476,0.003690475,0.0008898264,0.002147008,0.00330946,0.001301238,0.03793834],"category_scores_gemma":[0.005877159,0.002011642,0.002224856,0.002371951,0.0004225324,0.002811861,0.00278403,0.002836222,0.01560053],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005515356,"about_ca_system_score_gemma":0.00216433,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004199964,"about_ca_topic_score_gemma":0.005466375,"domain_scores_codex":[0.9988166,0.0003830277,0.0001345863,0.0002109763,0.0003460115,0.0001088949],"domain_scores_gemma":[0.9976828,0.001046202,0.0002116926,0.0003318373,0.0004668672,0.0002605945],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001642317,0.0002739247,0.003709889,0.002875024,0.0005692946,0.000862893,0.001342605,0.004129697,0.06191965,0.0107437,0.7716884,0.1402426],"study_design_scores_gemma":[0.0007439513,0.0001990028,0.009915913,0.0007510658,0.0002448376,0.001576195,0.000263576,0.0966321,0.041213,0.02749336,0.8204014,0.0005656251],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.007788532,0.001185012,0.4495448,0.0007679415,0.0003452077,0.0006409786,0.09059978,0.4424645,0.006663318],"genre_scores_gemma":[0.02550033,0.001041768,0.748251,0.0005105195,0.0001133978,0.002169591,0.1368159,0.07923878,0.006358771],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.03793834,"threshold_uncertainty_score":0.1269163,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03930066194095744,"score_gpt":0.3435166500634924,"score_spread":0.3042159881225349,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}