{"id":"W1969709265","doi":"10.1038/nbt.1666","title":"The BioPAX community standard for pathway data sharing","year":2010,"lang":"en","type":"article","venue":"Nature Biotechnology","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":756,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Ottawa; University of Toronto; Ontario Institute for Cancer Research","funders":"National Institute of Allergy and Infectious Diseases; National Human Genome Research Institute; Biotechnology and Biological Sciences Research Council; National Cancer Institute; National Institutes of Health; Genome Canada; Ontario Genomics; National Center for Research Resources; National Institute of General Medical Sciences; Ontario Genomics Institute; U.S. Department of Energy","keywords":"Computer science; Biological pathway; Biological data; Data exchange; Visualization; Fragmentation (computing); Data visualization; Data sharing; Software; Data science; Computational biology; Bioinformatics; Database; Data mining; Biology; Gene; Genetics; Programming language","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["open_science"],"consensus_categories":[],"category_scores_codex":[0.009461636,0.003285622,0.002177782,0.005526161,0.002541558,0.007865652,0.005115513,0.003001658,0.02513042],"category_scores_gemma":[0.01715563,0.002637473,0.003333597,0.009003556,0.001152961,0.008585242,0.006516934,0.008059978,0.03860813],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00175602,"about_ca_system_score_gemma":0.005910178,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004866006,"about_ca_topic_score_gemma":0.00382025,"domain_scores_codex":[0.9944312,0.000888156,0.001478303,0.0008964379,0.001699429,0.0006064524],"domain_scores_gemma":[0.9825321,0.002538222,0.0009032327,0.01012028,0.002868754,0.001037289],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002812793,0.0006546628,0.003401031,0.003354731,0.0004997741,0.0009185259,0.0007550438,0.006110681,0.04137739,0.1135823,0.687839,0.1386941],"study_design_scores_gemma":[0.0004737579,0.0001706755,0.003467719,0.0009887061,0.0002024186,0.001409763,0.0002435197,0.01770829,0.03534616,0.1407338,0.7989202,0.0003349116],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.004300147,0.0007377713,0.6459869,0.001342125,0.0007516316,0.001262339,0.112812,0.211213,0.02159411],"genre_scores_gemma":[0.02519253,0.001921942,0.4566315,0.001765362,0.0002327075,0.002954878,0.4609466,0.03397997,0.01637458],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.9948845,"threshold_uncertainty_score":0.08406961,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01432197613225312,"score_gpt":0.2756813365943813,"score_spread":0.2613593604621282,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}