{"id":"W1969832637","doi":"10.1371/journal.pgen.1000786","title":"Comparative ICE Genomics: Insights into the Evolution of the SXT/R391 Family of ICEs","year":2009,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":287,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; U.S. Department of Health and Human Services; National Institutes of Health; Fonds Québécois de la Recherche sur la Nature et les Technologies; Howard Hughes Medical Institute","keywords":"Biology; Genetics; Vibrio cholerae; Plasmid; Genome; Comparative genomics; Mobile genetic elements; Gene; Horizontal gene transfer; Homologous recombination; Computational biology; Genomics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003569817,0.0004270666,0.0004269416,0.0008297944,0.0003309115,0.0005617879,0.0003409279,0.0005150754,0.0010949],"category_scores_gemma":[0.0002869993,0.0001997379,0.0005442234,0.0008735529,0.0003457629,0.000767717,0.0005657309,0.0007754434,0.0005425861],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004429426,"about_ca_system_score_gemma":0.0003028478,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001078692,"about_ca_topic_score_gemma":0.001025121,"domain_scores_codex":[0.9998554,0.00001981134,0.000009615839,0.00005235043,0.00003138105,0.00003146454],"domain_scores_gemma":[0.9998429,0.00003358521,0.00004920035,0.00001474625,0.00002059678,0.00003896131],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002282614,0.0000496486,0.01086138,0.0002278786,0.00002823819,0.0005185955,0.0006704754,0.0009113522,0.9649163,0.001888179,0.00014755,0.01955222],"study_design_scores_gemma":[0.0000822178,0.001005126,0.7136269,0.0002692477,0.0002249332,0.006072637,0.002009196,0.01261536,0.1987236,0.004965099,0.06027966,0.0001260223],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9862824,0.001922866,0.006048883,0.0002497474,0.00001767086,0.00003104256,0.0008111749,0.00007368844,0.004562522],"genre_scores_gemma":[0.9800838,0.003486091,0.01009247,0.0002602322,0.00005870676,0.00003839,0.003316153,0.0001082832,0.002555996],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0010949,"threshold_uncertainty_score":0.003662825,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01679335680520123,"score_gpt":0.2346778948440148,"score_spread":0.2178845380388136,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}