{"id":"W1969933124","doi":"10.1371/journal.pone.0036518","title":"Pseudomonas syringae pv. actinidiae (PSA) Isolates from Recent Bacterial Canker of Kiwifruit Outbreaks Belong to the Same Genetic Lineage","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":140,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Regione Lazio; Agence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail; Ministero delle Politiche Agricole Alimentari e Forestali; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Università degli Studi della Tuscia; Shizuoka University; Sunchon National University; National Science Foundation","keywords":"Biology; Actinidia; Lineage (genetic); Genetics; Pseudomonas syringae; Genome; Outbreak; Canker; Genetic diversity; Gene; Botany; Virology; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002187336,0.0002096191,0.0003756363,0.00001105965,0.0001797048,0.00004276265,0.0003861292,0.0001054639,0.0008732403],"category_scores_gemma":[0.000204057,0.00007759579,0.00007563137,0.000198475,0.00005272269,0.0001031412,0.0002876507,0.0001405104,0.0001709684],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003157856,"about_ca_system_score_gemma":0.000009334073,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008846764,"about_ca_topic_score_gemma":0.001810486,"domain_scores_codex":[0.9985132,0.0001246358,0.0003431716,0.0002778541,0.0002654589,0.0004756525],"domain_scores_gemma":[0.9990463,0.0003996521,0.0001608812,0.0001389332,0.00008659172,0.0001676505],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007140748,0.0004181817,0.0237142,0.000006284091,0.0001630992,0.000001080066,0.0005024134,3.231317e-7,0.9709117,0.000002999696,0.0003776931,0.003830629],"study_design_scores_gemma":[0.0001376791,0.00015716,0.6997655,0.00007219026,0.0001377999,0.000003220264,0.0001549915,0.0000054272,0.2912779,0.00001106524,0.008051684,0.0002253952],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946032,0.0005495108,7.673035e-7,0.002973794,0.000328601,0.0003930692,0.0009274653,0.00005152448,0.0001720361],"genre_scores_gemma":[0.9962744,0.0006001523,0.0007462747,0.000301896,0.001740441,0.00005018892,0.0001326374,0.000003151567,0.0001508325],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6796339,"threshold_uncertainty_score":0.9561369,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05609526637720821,"score_gpt":0.2118964472753555,"score_spread":0.1558011808981473,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}