{"id":"W1969955142","doi":"10.1186/1471-2148-13-1","title":"New approaches for unravelling reassortment pathways","year":2013,"lang":"en","type":"article","venue":"BMC Evolutionary Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":506,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Science Foundation Ireland","keywords":"Reassortment; Biology; Phylogenetic tree; Viral phylodynamics; Evolutionary biology; Phylogenetics; Influenza A virus; Genetics; Pandemic; Population; Virology; Virus; Gene; Infectious disease (medical specialty); Coronavirus disease 2019 (COVID-19)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003897486,0.002010239,0.001489331,0.004309903,0.001068519,0.002874836,0.00313888,0.002010595,0.00351525],"category_scores_gemma":[0.01183694,0.001087079,0.002386714,0.002475657,0.001410805,0.003935419,0.003189334,0.003298664,0.001255621],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001338523,"about_ca_system_score_gemma":0.00163501,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001846391,"about_ca_topic_score_gemma":0.001826397,"domain_scores_codex":[0.9976646,0.0005338878,0.0002904093,0.0007328489,0.0006552618,0.0001229219],"domain_scores_gemma":[0.9926563,0.003494393,0.0008609213,0.001398644,0.001348031,0.0002416751],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0004797082,0.0003776893,0.01336669,0.001313453,0.000606014,0.0004744383,0.001116015,0.2203548,0.0565041,0.0566505,0.002555425,0.6462011],"study_design_scores_gemma":[0.00005996223,0.0001121003,0.001606149,0.0001257099,0.0001236705,0.0003800801,0.0001422824,0.8961297,0.01160963,0.08154161,0.008112526,0.0000565487],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.007782133,0.0004984701,0.9900467,0.0001612166,0.00003567762,0.00008386173,0.00008857842,0.0009249407,0.0003783982],"genre_scores_gemma":[0.03852452,0.0003686125,0.9599175,0.00008011427,0.00003404525,0.0001283473,0.0003141046,0.0002112744,0.0004214983],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.004309903,"threshold_uncertainty_score":0.02061212,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0513971026583998,"score_gpt":0.2348318679610953,"score_spread":0.1834347653026955,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}