{"id":"W1970155062","doi":"10.1016/j.virol.2013.03.025","title":"Genomic analysis of vaccinia virus strain TianTan provides new insights into the evolution and evolutionary relationships between Orthopoxviruses","year":2013,"lang":"en","type":"article","venue":"Virology","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":31,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Canada Foundation for Innovation; Alberta Cancer Foundation","keywords":"Biology; Vaccinia; Genetics; Genome; Gene; Lineage (genetic); Phylogenetic tree; Virology; Long terminal repeat; Virus; clone (Java method); Inverted repeat; Direct repeat","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001001824,0.0001982107,0.0002136116,0.0007701956,0.0003255252,0.0002630158,0.000181583,0.0002455639,0.0009851106],"category_scores_gemma":[0.0002090369,0.000163699,0.0003571945,0.000509945,0.0002953899,0.0003038082,0.0002212459,0.0004966978,0.0002425527],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003080231,"about_ca_system_score_gemma":0.0002862683,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002289099,"about_ca_topic_score_gemma":0.002843491,"domain_scores_codex":[0.9999459,0.000005905858,0.000004543045,0.00001842808,0.000009289402,0.00001596707],"domain_scores_gemma":[0.9998564,0.0000463693,0.00002962584,0.00001849745,0.0000170053,0.00003199443],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001455696,0.00002391445,0.01248583,0.00004376013,0.00001426505,0.0002346657,0.0002187143,0.00007720378,0.9807189,0.0003103631,0.00003301711,0.005693929],"study_design_scores_gemma":[0.00003374829,0.0006086189,0.7297403,0.00004096779,0.0002270349,0.003005603,0.001225775,0.001644506,0.2535401,0.001461903,0.0084255,0.00004594033],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969014,0.0003267937,0.001316245,0.00004162013,0.000009883629,0.00001304409,0.0003856243,0.00001067666,0.0009947132],"genre_scores_gemma":[0.9947667,0.0003208366,0.002370943,0.00006604126,0.00001379653,0.00001005136,0.001671634,0.0000183975,0.0007616989],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002289099,"threshold_uncertainty_score":0.004551589,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02354089846148763,"score_gpt":0.2571985256107405,"score_spread":0.2336576271492528,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}