{"id":"W1970166425","doi":"10.1006/jmbi.2000.4135","title":"Substrate recognition and induced DNA deformation by transposase at the target-capture stage of Tn10 transposition","year":2000,"lang":"en","type":"article","venue":"Journal of Molecular Biology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":34,"is_retracted":false,"has_abstract":false,"ca_institutions":"Western University","funders":"Medical Research Council","keywords":"Tn10; Transposase; Transposable element; DNA; Biology; Base pair; Insertion sequence; Transposition (logic); Genetics; Consensus sequence; Mutant; Biophysics; Gene; Base sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001273073,0.00006615771,0.0000976014,0.00001845366,0.00005384882,0.000006749723,0.00006144613,0.00007911684,0.002172868],"category_scores_gemma":[0.000002747153,0.0000449636,0.00006452916,0.00005332332,0.00008022847,0.0001347207,0.000004745626,0.0001273583,0.00002167695],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003341083,"about_ca_system_score_gemma":0.000004508561,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008979372,"about_ca_topic_score_gemma":0.00004687564,"domain_scores_codex":[0.9994624,0.00009383084,0.000241981,0.0000670171,0.00004870819,0.00008610978],"domain_scores_gemma":[0.9997327,0.00001221257,0.0001544317,0.0000518074,0.00001299857,0.00003584285],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001154621,0.00003327072,0.00009766203,0.000004024522,0.00001557244,0.000004252739,0.0002702035,0.00003704982,0.993347,0.000001417542,0.00006711378,0.006006942],"study_design_scores_gemma":[0.0004642771,0.0003114788,0.01051165,0.00001552737,0.00003866482,0.0001832932,0.00006095716,0.00001641512,0.9843293,0.0001577793,0.003835751,0.00007493711],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980249,0.0001246696,0.0007638176,0.0006429444,0.00004428842,0.00007421411,0.0001141648,0.00000208418,0.0002089136],"genre_scores_gemma":[0.9991153,0.0001498706,0.0002313629,0.0003148156,0.000008652469,0.000001117387,0.00007031238,0.000004372082,0.00010419],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01041399,"threshold_uncertainty_score":0.9987393,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007972450070292425,"score_gpt":0.2209910056163333,"score_spread":0.2130185555460408,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}