{"id":"W1970430258","doi":"10.1007/bf03191139","title":"Comparison of base composition and codon usage in insect mitochondrial genomes","year":2009,"lang":"en","type":"article","venue":"Genes & Genomics","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":false,"ca_institutions":"Royal Ontario Museum","funders":"","keywords":"Biology; Codon usage bias; Transfer RNA; Genome; Mitochondrial DNA; Genetics; GC-content; Gene; Evolutionary biology; RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009680499,0.0001190933,0.0002027312,0.00005304836,0.00003879162,0.00001375856,0.0001085435,0.0001259732,0.000009244877],"category_scores_gemma":[0.000007515449,0.0001254206,0.00004650994,0.00004570832,0.00003293545,0.0000030273,0.00003931181,0.00004199856,0.000002561796],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001386823,"about_ca_system_score_gemma":0.00003224008,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001277443,"about_ca_topic_score_gemma":0.00002949457,"domain_scores_codex":[0.9992386,0.00006614942,0.0002466154,0.0002313031,0.00006518246,0.0001522129],"domain_scores_gemma":[0.9996243,0.00001066826,0.00009494935,0.000200165,0.00002362332,0.00004636811],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001755166,0.00006487162,0.003098883,0.000009919207,0.000008491603,0.000001384307,0.000128468,0.0001926285,0.945766,0.00005152866,0.00003766231,0.05046463],"study_design_scores_gemma":[0.0004665318,0.0003497514,0.002754834,0.000009313671,0.00001184943,0.000007942151,0.00004968957,0.0001177838,0.9872462,0.0002536938,0.008588593,0.0001438011],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922025,0.005657041,0.001566519,0.000055293,0.0001065904,0.00021566,0.00001857735,0.000004723782,0.0001730971],"genre_scores_gemma":[0.9921829,0.0008152772,0.006628797,0.0001052779,0.0001491641,0.000006281042,0.00006535249,0.00001102303,0.00003599301],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05032083,"threshold_uncertainty_score":0.5114503,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02091713149726747,"score_gpt":0.2657113597030658,"score_spread":0.2447942282057983,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}