{"id":"W1970517964","doi":"10.1371/journal.pone.0008842","title":"Complete Genome Sequence of the Multiresistant Taxonomic Outlier Pseudomonas aeruginosa PA7","year":2010,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":283,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Office of Science; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Biology; Genetics; Genome; Housekeeping gene; Prophage; Gene; Genomic island; Mobile genetic elements; Pseudomonas aeruginosa; Whole genome sequencing; Insertion sequence; Multilocus sequence typing; Virulence; Microbiology; Sequence analysis; Horizontal gene transfer; Transposable element; Bacteria; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009810284,0.0001203714,0.0001654677,0.00001462892,0.0000810958,0.00001648278,0.000225548,0.0001163616,0.00003650975],"category_scores_gemma":[0.00005863961,0.00009186921,0.00008061728,0.00004305761,0.0001738036,0.000002560334,0.0001422301,0.0001320467,0.00001347857],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006853203,"about_ca_system_score_gemma":0.00004788426,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005356916,"about_ca_topic_score_gemma":0.0001036173,"domain_scores_codex":[0.9992332,0.00003351089,0.0001966831,0.0002313378,0.0001093776,0.000195856],"domain_scores_gemma":[0.999242,0.000009236544,0.0001215211,0.0005014773,0.00007195322,0.00005381845],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000417878,0.00013374,0.001269032,0.00001937856,0.00006629054,7.673751e-7,0.00001555261,0.000001202559,0.99826,0.00005114634,0.00004531881,0.00009582261],"study_design_scores_gemma":[0.0002878141,0.00005973993,0.01079411,0.00002158199,0.00003972159,0.00000396546,0.00001053549,0.00004163687,0.9779528,0.000005669546,0.01063568,0.000146735],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985338,0.00004828787,0.000005589038,0.0002494396,0.0001729731,0.0002018585,0.0002312865,0.000007967613,0.0005487817],"genre_scores_gemma":[0.996253,0.00002763492,0.00289095,0.0001667046,0.0002220045,0.000005387833,0.00006047369,0.00001647294,0.0003573508],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02030715,"threshold_uncertainty_score":0.3746318,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03826754812193823,"score_gpt":0.216202775566749,"score_spread":0.1779352274448107,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}