{"id":"W1970616250","doi":"10.1186/1471-2105-13-123","title":"Quartet decomposition server: a platform for analyzing phylogenetic trees","year":2012,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Canadian Institutes of Health Research; West Virginia University; National Science Foundation","keywords":"Phylogenetic tree; Phylogenetic network; Tree (set theory); Phylogenetics; Decomposition; Biology; Web server; Genomics; Identification (biology); Genome; Computer science; Evolutionary biology; Data mining; Gene; Computational biology; The Internet; Genetics; Ecology; Mathematics; Combinatorics; World Wide Web","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002199357,0.0001816454,0.000167164,0.00005168748,0.000158059,0.00003220596,0.0001482957,0.00011809,0.000005167024],"category_scores_gemma":[0.00003428706,0.0001666913,0.0001485552,0.00006716692,0.00004113156,0.000004655377,0.0000819641,0.00003766106,0.00001626044],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001608499,"about_ca_system_score_gemma":0.00003716998,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004090461,"about_ca_topic_score_gemma":0.00005597072,"domain_scores_codex":[0.9990555,0.00001120928,0.0003291793,0.0001187694,0.00008859441,0.0003967502],"domain_scores_gemma":[0.9993799,0.00002900724,0.0001336413,0.0002808672,0.00006936638,0.0001072524],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006002518,0.0006093815,0.4658633,0.001097173,0.001001764,3.820161e-7,0.004315078,0.006705815,0.4675366,0.003138455,0.01099391,0.03813796],"study_design_scores_gemma":[0.008512946,0.003593844,0.3263082,0.0001388384,0.0008215341,0.0001527086,0.004322712,0.08892516,0.3452825,0.001643046,0.2166544,0.003644141],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9326064,0.001970835,0.06400016,0.00002430154,0.0002771217,0.0004011449,0.00007796705,0.000009425807,0.0006326262],"genre_scores_gemma":[0.9116823,0.0001765428,0.08729671,0.0001452545,0.0003679705,0.00005617268,0.0001777928,0.00002015738,0.00007708446],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2056605,"threshold_uncertainty_score":0.6797475,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02352781055027834,"score_gpt":0.2710020579131435,"score_spread":0.2474742473628652,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}