{"id":"W1970847753","doi":"10.1371/journal.pone.0095349","title":"DNA Sequence Heterogeneity of Campylobacter jejuni CJIE4 Prophages and Expression of Prophage Genes","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"Government of Canada","keywords":"Prophage; Biology; Campylobacter jejuni; Genetics; Gene; Temperateness; Genome; Lysogenic cycle; GenBank; DNA; Bacteriophage; Bacteria; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001399277,0.0003081691,0.0002071713,0.001291099,0.0001971576,0.0004334561,0.0002246846,0.000378846,0.0009358355],"category_scores_gemma":[0.0007761599,0.0002015165,0.0002881995,0.000643616,0.0002542453,0.0001795095,0.0003039956,0.000437536,0.0002816718],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002711911,"about_ca_system_score_gemma":0.0001959224,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001446017,"about_ca_topic_score_gemma":0.001271606,"domain_scores_codex":[0.9997445,0.00001923296,0.00002733806,0.00007281102,0.00007091446,0.000065299],"domain_scores_gemma":[0.999313,0.0001911425,0.0001862227,0.00005628392,0.0001499525,0.0001033982],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001016049,0.0000173149,0.00329581,0.00002986963,0.00001020874,0.00005721462,0.00007436759,0.00003442363,0.9955112,0.00002276572,0.000008812075,0.0008364256],"study_design_scores_gemma":[0.00002575749,0.0007049433,0.5005679,0.00003752131,0.0001380292,0.002133588,0.0006337892,0.001159721,0.4913664,0.0001450163,0.003047033,0.0000403851],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985843,0.0001733145,0.0005781977,0.00001406492,0.000003664808,0.0000123837,0.0003161462,0.000006921295,0.0003111062],"genre_scores_gemma":[0.9946833,0.0001871938,0.001557844,0.00003397336,0.000009299728,0.00003707407,0.00251182,0.00001648962,0.000963014],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001446017,"threshold_uncertainty_score":0.003130615,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03293500295541393,"score_gpt":0.2279555248994242,"score_spread":0.1950205219440102,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}