{"id":"W1970939001","doi":"10.1038/gene.2011.69","title":"Refinement of the genetics of the host response to Salmonella infection in MOLF/Ei: regulation of type 1 IFN and TRP3 pathways by Ity2","year":2011,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"interferon and immune responses","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Calgary; Memorial University of Newfoundland; McGill University","funders":"Canadian Institutes of Health Research; Génome Québec; McGill University","keywords":"Biology; Salmonella; Congenic; Locus (genetics); Allele; Microbiology; Typhoid fever; Salmonella typhi; Genetics; Virology; Gene; Bacteria; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004109694,0.00007992033,0.0001566546,0.0000557645,0.00007724605,0.000001895228,0.0001130193,0.00009785267,0.00004868435],"category_scores_gemma":[0.0001029128,0.00005091998,0.00003588864,0.0001409377,0.0001959945,0.00001818513,0.000186501,0.0001004821,0.000001209062],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001155798,"about_ca_system_score_gemma":0.0000346773,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00149772,"about_ca_topic_score_gemma":0.0001214905,"domain_scores_codex":[0.9989491,0.0005888845,0.000261803,0.00008136052,0.00002559959,0.00009327302],"domain_scores_gemma":[0.9993998,0.00007115523,0.0001389425,0.0003036062,0.00007977975,0.0000066694],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001941749,0.00008911258,0.0252071,0.00001958105,0.00002584703,2.428192e-8,0.001808319,0.000002136932,0.9678338,0.00006131022,0.00008386277,0.002927131],"study_design_scores_gemma":[0.0002305557,0.0002933028,0.4978765,0.00002878327,0.000009531468,0.000003043725,0.0001689415,0.000002250535,0.5002537,0.00001984747,0.001084151,0.00002938768],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953895,0.004021887,0.000008521564,0.0000506778,0.000178452,0.0001811498,0.00002298649,0.000002709034,0.0001441845],"genre_scores_gemma":[0.9987367,0.0008005131,0.00001800844,0.0000239885,0.000001695089,0.000002968936,0.000003387378,0.000004988111,0.0004077912],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4726694,"threshold_uncertainty_score":0.2264115,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02595955282830284,"score_gpt":0.2275569283638785,"score_spread":0.2015973755355756,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}