{"id":"W1971452678","doi":"10.1371/journal.pone.0060029","title":"Multiple Interkingdom Horizontal Gene Transfers in Pyrenophora and Closely Related Species and Their Contributions to Phytopathogenic Lifestyles","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"Royal Ontario Museum","funders":"Chinese Academy of Sciences; National Natural Science Foundation of China","keywords":"Horizontal gene transfer; Biology; Gene; Pyrenophora; Genetics; Genome; Gene family; Phylogenetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008404974,0.0001135514,0.0001863297,0.00002468768,0.0001438003,0.00007849421,0.00008927855,0.00006534457,0.0001068432],"category_scores_gemma":[0.00007639063,0.00004909387,0.00003007161,0.0001524234,0.00005537584,0.0001476504,0.00004945029,0.0001642948,0.00002675421],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002816316,"about_ca_system_score_gemma":0.000003866847,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001210732,"about_ca_topic_score_gemma":0.002785857,"domain_scores_codex":[0.9993377,0.00005934239,0.0001788918,0.0001790583,0.00005322376,0.0001917457],"domain_scores_gemma":[0.9996078,0.0001802754,0.00002648632,0.00003944422,0.00005778951,0.0000881796],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002412773,0.0002878564,0.013959,0.000003106721,0.00002933216,0.000001352296,0.0002629311,1.467901e-7,0.9820749,0.00001745093,0.00003101266,0.003308743],"study_design_scores_gemma":[0.0003335644,0.0005046888,0.7272153,0.0001254635,0.00001754219,0.00001916898,0.0008250547,0.0001399437,0.2699043,0.0001341997,0.0005793386,0.0002014321],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974631,0.0002403014,0.00000145097,0.001384744,0.00002902304,0.0003141834,0.0004518937,0.00003298731,0.00008230329],"genre_scores_gemma":[0.999295,0.0003086613,0.00007780166,0.00007319028,0.00004403703,0.00003173337,0.00007252165,0.000001069115,0.00009599813],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7132564,"threshold_uncertainty_score":0.200199,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02384686658903881,"score_gpt":0.1927397911028789,"score_spread":0.1688929245138401,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}