{"id":"W1971491328","doi":"10.1371/journal.pgen.1003479","title":"A Compendium of Nucleosome and Transcript Profiles Reveals Determinants of Chromatin Architecture and Transcription","year":2013,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":145,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Occupational Cancer Research Centre; University of Toronto","funders":"Canadian Institutes of Health Research; Nederlandse Organisatie voor Wetenschappelijk Onderzoek","keywords":"Nucleosome; Biology; Genetics; Chromatin; Histone; Histone methylation; SWI/SNF; Transcription (linguistics); Histone code; Cell biology; Gene; Gene expression; DNA methylation","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005097731,0.0001350421,0.0002268599,0.00003716264,0.00002850627,0.00001197975,0.000103953,0.0001152741,0.000012965],"category_scores_gemma":[0.00001012829,0.0001265759,0.000041928,0.00003382758,0.0001455223,0.000002553951,0.00003948979,0.00004803548,6.080649e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000002500783,"about_ca_system_score_gemma":0.00001746999,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008220378,"about_ca_topic_score_gemma":0.00001976517,"domain_scores_codex":[0.9992308,0.00003445198,0.0003013615,0.0001992948,0.00008988564,0.0001442039],"domain_scores_gemma":[0.9995415,0.000007866324,0.000125744,0.0001988869,0.00006403814,0.00006201163],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000130108,0.00005881436,0.009594497,0.0003653025,0.00003129914,2.738457e-7,0.0003239012,0.00001527655,0.9876127,0.00001680616,0.00001968018,0.001948487],"study_design_scores_gemma":[0.0005213862,0.0004967496,0.03873628,0.00006870244,0.00005269534,0.00002035236,0.0001310071,0.003349446,0.9557714,0.0006028237,0.00007866816,0.0001704267],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978332,0.001471463,0.0001211508,0.00003935308,0.00002517089,0.0003539871,0.0000804751,0.000003947614,0.00007125262],"genre_scores_gemma":[0.9941878,0.0004790241,0.005179429,0.00002901483,0.00002711046,0.00001567772,0.00002649325,0.00002117609,0.00003428795],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03184119,"threshold_uncertainty_score":0.5161616,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007579710999937687,"score_gpt":0.2031002948463543,"score_spread":0.1955205838464166,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}