{"id":"W1971491900","doi":"10.4161/trns.1.2.12328","title":"Illuminating transcription pathways using fluorescent reporter genes and yeast functional genomics","year":2010,"lang":"en","type":"article","venue":"Transcription","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Budding yeast; Computational biology; Functional genomics; Exploit; Biology; Yeast; Genomics; Gene; Transcription factor; Transcription (linguistics); Saccharomyces cerevisiae; Genetics; Genome; Computer science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001746017,0.0001529294,0.0001060408,0.0000438129,0.0001400387,0.00005615909,0.00007529282,0.0001754558,0.00001391318],"category_scores_gemma":[0.000007315361,0.0001639883,0.00008044668,0.00003945826,0.00006361341,0.00001320365,0.00001759386,0.0001136469,0.000001487352],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001858628,"about_ca_system_score_gemma":0.00005312071,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001323338,"about_ca_topic_score_gemma":0.00009452069,"domain_scores_codex":[0.9991093,0.00002100851,0.0002514957,0.0003275522,0.0001048069,0.0001858743],"domain_scores_gemma":[0.9995458,0.000001619099,0.00008140293,0.0002243189,0.00007269008,0.00007414747],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002390541,0.00003732538,0.0004519481,0.0000254188,0.00002015162,0.000001882605,0.0001792931,0.0001223462,0.991776,0.0004186158,0.00001496404,0.006928102],"study_design_scores_gemma":[0.001243272,0.0001840735,0.01904017,0.00001838762,0.00008990226,0.0004206832,0.0003381039,0.03951563,0.9311268,0.0005644418,0.006884359,0.0005741366],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9579573,0.0002299608,0.04088269,0.00005151992,0.000571348,0.0001522245,0.00002458245,0.00001958926,0.0001107908],"genre_scores_gemma":[0.9904624,0.0001565456,0.008737606,0.0000689132,0.0002881458,0.000009388305,0.0002001495,0.00002696725,0.00004986652],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06064921,"threshold_uncertainty_score":0.668725,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0173019119651915,"score_gpt":0.2111433767624874,"score_spread":0.1938414647972959,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}