{"id":"W1971491900","doi":"10.4161/trns.1.2.12328","title":"Illuminating transcription pathways using fluorescent reporter genes and yeast functional genomics","year":2010,"lang":"en","type":"article","venue":"Transcription","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Budding yeast; Computational biology; Functional genomics; Exploit; Biology; Yeast; Genomics; Gene; Transcription factor; Transcription (linguistics); Saccharomyces cerevisiae; Genetics; Genome; Computer science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008091484,0.0006782008,0.0007043157,0.0009374816,0.0003174265,0.0007837008,0.0006351761,0.0006602014,0.0005588969],"category_scores_gemma":[0.0004995257,0.0003486342,0.0008746365,0.0008755891,0.0009090564,0.0007491901,0.0005644783,0.001418584,0.0003188866],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006280809,"about_ca_system_score_gemma":0.0004678594,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001333679,"about_ca_topic_score_gemma":0.001864363,"domain_scores_codex":[0.9996206,0.00007000499,0.00002281141,0.00008005562,0.0001621753,0.00004441385],"domain_scores_gemma":[0.999747,0.0001446977,0.0000406019,0.00002855763,0.00002466663,0.00001447694],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007575875,0.00002866738,0.0003649591,0.0003516639,0.00002262501,0.00006896887,0.00005119621,0.00120146,0.9588028,0.006256595,0.0002972897,0.03247799],"study_design_scores_gemma":[0.00002016103,0.0001425356,0.001392428,0.00003882462,0.00003751924,0.0004890295,0.00005538368,0.004209001,0.9714339,0.005583531,0.01655199,0.00004575788],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.1981118,0.05191696,0.7370467,0.002936271,0.000279163,0.0002188536,0.001997872,0.001687814,0.005804476],"genre_scores_gemma":[0.4427667,0.08901697,0.4600839,0.001030967,0.0002069732,0.0003970665,0.002698619,0.0002271549,0.003571672],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.001333679,"threshold_uncertainty_score":0.004557073,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0173019119651915,"score_gpt":0.2111433767624874,"score_spread":0.1938414647972959,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}