{"id":"W1971625212","doi":"10.1016/j.gene.2005.05.045","title":"Endogenous retrovirus long terminal repeats as ready-to-use mobile promoters: The case of primate β3GAL-T5","year":2005,"lang":"en","type":"article","venue":"Gene","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":50,"is_retracted":false,"has_abstract":false,"ca_institutions":"BC Cancer Agency; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Long terminal repeat; Biology; Endogenous retrovirus; Promoter; Genetics; Gene; Provirus; Retrovirus; Germline; Retrotransposon; Baboon; Transposable element; Genome; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001581998,0.0001144265,0.0001296425,0.000009323277,0.0002269578,0.0000520758,0.0001972916,0.00005644264,0.0003610342],"category_scores_gemma":[0.00004177863,0.00003966875,0.00006971093,0.000202102,0.00004377081,0.00006978578,0.00009482223,0.00006681553,0.0001329075],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002443087,"about_ca_system_score_gemma":0.00001415326,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001126819,"about_ca_topic_score_gemma":0.001619426,"domain_scores_codex":[0.9990922,0.00005969995,0.0002302554,0.0002496669,0.0001271456,0.000241009],"domain_scores_gemma":[0.9995181,0.0000819425,0.00008732178,0.0001437625,0.00006946182,0.00009938792],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002491873,0.0001261779,0.0009207637,0.000004227767,0.0000143102,0.0003263927,0.0005804157,0.00005259491,0.8178546,0.00003366615,0.00009775271,0.1799642],"study_design_scores_gemma":[0.0004289079,0.002467383,0.06423341,0.00004247676,0.0001161081,0.01258025,0.0005510708,0.0001872765,0.882922,0.0002963591,0.03562323,0.0005515537],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980273,0.0001285841,0.000003571076,0.000707306,0.00006111994,0.0004260633,0.0001108294,0.00003488699,0.0005003359],"genre_scores_gemma":[0.998098,0.00003019309,0.0006642541,0.0002530011,0.0002911247,0.00004808275,0.00003045783,0.00000134215,0.0005835721],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1794126,"threshold_uncertainty_score":0.3953072,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03308813395892363,"score_gpt":0.2540386330288364,"score_spread":0.2209504990699128,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}