{"id":"W1971803482","doi":"10.1186/1471-2164-15-851","title":"Comparative and genetic analysis of the four sequenced Paenibacillus polymyxa genomes reveals a diverse metabolism and conservation of genes relevant to plant-growth promotion and competitiveness","year":2014,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":88,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Western University","funders":"Agriculture and Agri-Food Canada","keywords":"Paenibacillus polymyxa; Biology; Genome; Genetics; Gene; Comparative genomics; Whole genome sequencing; Genome evolution; Genomics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001468571,0.0000894218,0.0002788528,0.00003470472,0.0001332643,0.0000235239,0.00008757223,0.00003327661,0.00001381935],"category_scores_gemma":[0.00002600564,0.00003848701,0.00004185453,0.0002122099,0.0001069494,0.00004927028,0.00009803865,0.00003913924,2.87029e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009510754,"about_ca_system_score_gemma":0.000007980636,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001098746,"about_ca_topic_score_gemma":0.002612324,"domain_scores_codex":[0.9993204,0.0001722302,0.0002046721,0.0001525571,0.00006269923,0.00008741111],"domain_scores_gemma":[0.9994269,0.0002076518,0.0001721602,0.00005315296,0.00009975142,0.00004037503],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000351134,0.00002005389,0.1786899,0.00001285126,0.00008029901,1.206428e-7,0.0004050598,0.00004086801,0.8187554,0.0001671451,0.000002544356,0.001790596],"study_design_scores_gemma":[0.0001057241,0.00006818891,0.9728114,0.00001648365,0.0001915527,0.00001081285,0.0005067363,0.001323629,0.02452948,0.0001300603,0.0002249648,0.00008099246],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987773,0.000282438,0.0000812887,0.0001877918,0.00002924076,0.0002016539,0.0004171557,0.00000375158,0.00001940714],"genre_scores_gemma":[0.9989938,0.000235161,0.0006588654,0.00004191128,0.00001487898,0.000004519994,0.00002950029,5.633089e-7,0.00002086628],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7942259,"threshold_uncertainty_score":0.1660983,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04377044014917416,"score_gpt":0.2338972286737362,"score_spread":0.190126788524562,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}