{"id":"W1971827896","doi":"10.1007/s12223-012-0155-0","title":"Low sequencing efforts bias analyses of shared taxa in microbial communities","year":2012,"lang":"en","type":"article","venue":"Folia Microbiologica","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Toronto","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico","keywords":"Pyrosequencing; Biology; Phylogenetic tree; Taxon; Community structure; Microbial population biology; Phylogenetic diversity; Taxonomic rank; UniFrac; Metagenomics; Sample (material); Population; Sampling (signal processing); Ecology; 16S ribosomal RNA; Evolutionary biology; Genetics; Computer science; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0227103,0.001637539,0.001483138,0.003624054,0.002990964,0.005283977,0.001121516,0.002613905,0.003129192],"category_scores_gemma":[0.08355778,0.001362514,0.001491336,0.003063841,0.003952068,0.00257495,0.004385032,0.002713282,0.001436227],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001018121,"about_ca_system_score_gemma":0.001234968,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001604968,"about_ca_topic_score_gemma":0.007275678,"domain_scores_codex":[0.9597234,0.01979927,0.003438998,0.00984759,0.005296628,0.001894174],"domain_scores_gemma":[0.9244116,0.05098484,0.00758269,0.009868341,0.005104953,0.002047641],"domain_codex":null,"domain_gemma":"methods","domain_candidate":"methods","domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001725077,0.0004414789,0.5571161,0.001630943,0.004321183,0.0006340815,0.004605423,0.005482523,0.3512675,0.006354984,0.002107725,0.06431295],"study_design_scores_gemma":[0.0002056201,0.0008848415,0.7513569,0.000568183,0.003251497,0.001788877,0.003045206,0.02757047,0.1504268,0.03358087,0.02717005,0.0001506757],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8829925,0.001412941,0.1016482,0.0006726917,0.0003932799,0.000313407,0.001996613,0.0007640827,0.009806462],"genre_scores_gemma":[0.9361159,0.0003380798,0.05514175,0.002776786,0.0001757168,0.0003711661,0.003149157,0.000480289,0.001451126],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9772897,"threshold_uncertainty_score":0.120105,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09462320046923996,"score_gpt":0.3264860032513212,"score_spread":0.2318628027820813,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}