{"id":"W1971862202","doi":"10.1016/j.anaerobe.2009.01.001","title":"Physical and genetic characterization of an outer-membrane protein (OmpM1) containing an N-terminal S-layer-like homology domain from the phylogenetically Gram-positive gut anaerobe Mitsuokella multacida","year":2009,"lang":"en","type":"article","venue":"Anaerobe","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Lethbridge; Health Canada; Agriculture and Agri-Food Canada","funders":"","keywords":"Bacterial outer membrane; Porin; Cell envelope; Molecular mass; Peptide sequence; Biology; Biochemistry; Outer membrane efflux proteins; Amino acid; Gel electrophoresis; Homology (biology); S-layer; Peptidoglycan; Membrane protein; Molecular biology; Cell wall; Membrane; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001117452,0.0002538336,0.0002645801,0.00003984798,0.0001440233,0.00005446232,0.0002309152,0.0001805186,0.00001219841],"category_scores_gemma":[0.0000263391,0.0002194894,0.00006558354,0.0001046725,0.0001899782,0.00002662379,0.00005787609,0.0001303077,0.000002858804],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009982871,"about_ca_system_score_gemma":0.00004171522,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005194342,"about_ca_topic_score_gemma":0.00007578509,"domain_scores_codex":[0.9983622,0.000291643,0.0003197279,0.0006033395,0.0001532436,0.0002698569],"domain_scores_gemma":[0.999046,0.00001271476,0.0002042155,0.0004666915,0.0001437385,0.0001266211],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002721236,0.0002429923,0.000827586,0.000006404477,0.00003802081,0.00001676992,0.0005586422,0.00001210574,0.984512,0.0001360267,0.000004241989,0.0133731],"study_design_scores_gemma":[0.000844395,0.002325468,0.2076706,0.00002373561,0.00004900428,0.00005530316,0.0001252522,0.0003948241,0.7876198,0.0001824047,0.0004107766,0.0002984366],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9951683,0.00007479554,0.003699596,0.0003966483,0.00008428589,0.0004471136,0.00007913139,0.00002086773,0.00002931373],"genre_scores_gemma":[0.9946495,0.00006945737,0.0023475,0.0008415483,0.0005621253,0.00002448365,0.001418898,0.00002694835,0.00005957388],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2068431,"threshold_uncertainty_score":0.8950518,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007025871339701889,"score_gpt":0.2364026605823028,"score_spread":0.2293767892426009,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}