{"id":"W1972107391","doi":"10.1371/journal.ppat.1003503","title":"Genomic Analysis of the Kiwifruit Pathogen Pseudomonas syringae pv. actinidiae Provides Insight into the Origins of an Emergent Plant Disease","year":2013,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":277,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"University of Toronto; Allan Wilson Centre","keywords":"Biology; Genome; Genetics; Pathovar; Pseudomonas syringae; Population; Actinidia; Clade; Evolutionary biology; Genomic island; Domestication; Phylogenetics; Gene; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002767943,0.0002965967,0.0005326261,0.00004818292,0.0003773054,0.00004403133,0.0009190454,0.00008534529,0.0003324063],"category_scores_gemma":[0.0001761475,0.00009079103,0.0004536933,0.0009539229,0.0002123701,0.0001578173,0.0003906763,0.0001459286,0.00002373651],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007357552,"about_ca_system_score_gemma":0.0000433587,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000883806,"about_ca_topic_score_gemma":0.002266064,"domain_scores_codex":[0.9977312,0.0003512441,0.0005922948,0.0004759908,0.0004578742,0.0003914154],"domain_scores_gemma":[0.9984927,0.0003009622,0.0004557806,0.000391431,0.0001666404,0.000192546],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003480347,0.0002625928,0.095575,0.00002000939,0.0005478958,0.000005110261,0.001574627,0.00003132692,0.8997744,0.00009991815,0.00003031751,0.002043949],"study_design_scores_gemma":[0.00008768009,0.000107119,0.9714904,0.00002793014,0.001215936,0.000002134488,0.0007078585,0.0006709719,0.02300698,0.00009225121,0.002349986,0.0002407708],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953371,0.0003736572,5.767001e-7,0.0006942545,0.0001376363,0.0007800028,0.002550059,0.00004101782,0.00008567688],"genre_scores_gemma":[0.9989443,0.0002579552,0.00008922991,0.0001192034,0.000135336,0.0001502174,0.0002519979,0.000003939595,0.00004780492],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8767675,"threshold_uncertainty_score":0.3702351,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02289298075986148,"score_gpt":0.2048571496619712,"score_spread":0.1819641689021097,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}