{"id":"W1972177941","doi":"10.1038/npre.2011.6710.1","title":"Geographical and chronological origin and evolution of Hepatitis C Virus.","year":2011,"lang":"en","type":"preprint","venue":"Nature Precedings","topic":"Hepatitis C virus research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Biology; Virus; Genotype; Genetics; Mutation rate; Phylogenetic tree; Hepatitis C virus; RNA virus; Viral evolution; Virology; Hepatocellular carcinoma; Genome; Mutation; Evolutionary biology; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0004537958,0.0003014033,0.0007068496,0.0004347302,0.00005605001,0.00002975126,0.0001773074,0.002299178,0.0002022961],"category_scores_gemma":[0.0008289261,0.000254982,0.0001182675,0.0002175652,0.0005829593,0.00007100024,0.000877141,0.003690476,0.00000583172],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001553384,"about_ca_system_score_gemma":0.0001963185,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003654,"about_ca_topic_score_gemma":0.0004285271,"domain_scores_codex":[0.9979314,0.00008059493,0.0003751333,0.0007254669,0.0005281708,0.0003592485],"domain_scores_gemma":[0.9987521,0.0001141184,0.0001630167,0.0003640781,0.0003187837,0.0002879693],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002853442,0.0001209113,0.9714119,0.0009938786,0.0001942853,0.00003024362,0.00027528,1.494001e-7,0.007019712,0.004546879,0.001251665,0.01386971],"study_design_scores_gemma":[0.0009402786,0.0005760344,0.9789035,0.0008263873,0.0001962235,0.00006091287,0.00001081865,0.0003834071,0.003964435,0.008629485,0.005186562,0.0003219934],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9813795,0.01125322,0.0001216932,0.0005354738,0.0002738876,0.0007727233,0.00008751677,0.00009446386,0.005481541],"genre_scores_gemma":[0.9817964,0.01453354,0.003138026,0.0000906582,0.0002172516,0.00005744537,0.000046351,0.00003244661,0.00008787437],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01354771,"threshold_uncertainty_score":0.9999902,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0257007343202056,"score_gpt":0.3202734334744829,"score_spread":0.2945726991542773,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}