{"id":"W1973453770","doi":"10.4236/jep.2012.312181","title":"Prokaryotic Horizontal Gene Transfer in Freshwater Lakes: Implications of Dynamic Biogeochemical Zonation","year":2012,"lang":"en","type":"article","venue":"Journal of Environmental Protection","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Biogeochemical cycle; Horizontal gene transfer; Freshwater ecosystem; Ecology; Biology; Ecosystem; Gene; Phylogenetics; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003218211,0.0000893895,0.0001476274,0.000072171,0.0000595561,0.000002401279,0.0001320715,0.0001163078,0.001870326],"category_scores_gemma":[0.00001043843,0.00008054601,0.00007415915,0.00009185089,0.0001639968,0.0003102553,0.000047219,0.0002984314,0.00004246265],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000305612,"about_ca_system_score_gemma":0.000005856517,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003918929,"about_ca_topic_score_gemma":0.0003215842,"domain_scores_codex":[0.999156,0.0001373314,0.0003547572,0.00008085983,0.0001019338,0.000169119],"domain_scores_gemma":[0.9996876,0.0000209847,0.0001271392,0.0001092829,0.000002606713,0.00005245115],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008409926,0.0004927964,0.03346414,0.000005107805,0.00001104211,4.349013e-7,0.0003037428,0.00009531619,0.9637061,0.00000778011,0.00002739027,0.001802085],"study_design_scores_gemma":[0.0007555051,0.0005752231,0.7789285,0.00001498825,0.00003122713,0.000199444,0.0001306499,0.000153394,0.21684,0.001429404,0.0007862851,0.0001553708],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982702,0.00005242873,0.001004371,0.0001696917,0.0001016202,0.000250186,0.00002570747,0.000003177038,0.0001225898],"genre_scores_gemma":[0.9993675,0.00003429538,0.0004823061,0.00002838169,0.0000329771,0.00001132457,0.00002275833,0.000007594625,0.00001281793],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7468661,"threshold_uncertainty_score":0.9990421,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009517709177903148,"score_gpt":0.2109450456027931,"score_spread":0.20142733642489,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}