{"id":"W1973527783","doi":"10.1128/jcm.01884-10","title":"Multilocus Sequence Typing Subtypes of Poultry Clostridium perfringens Isolates Demonstrate Disease Niche Partitioning","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"University of Guelph","keywords":"Biology; Clostridium perfringens; Multilocus sequence typing; Microbiology; Genotype; Genetics; Population; Typing; Virology; Gene; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001482563,0.0002300759,0.001011098,0.0002104198,0.00008180512,0.00001148869,0.0003088558,0.0003152901,0.0005069323],"category_scores_gemma":[0.002683654,0.0001777931,0.0006440427,0.0002462964,0.000597566,0.0001014742,0.0001143353,0.001123066,0.00005319229],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005793611,"about_ca_system_score_gemma":0.0009189317,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003152389,"about_ca_topic_score_gemma":0.000003966326,"domain_scores_codex":[0.9966322,0.0003212498,0.002124423,0.0003251156,0.0001161793,0.0004808631],"domain_scores_gemma":[0.9965746,0.000717017,0.001005488,0.0003532358,0.0008346597,0.0005150125],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.005107106,0.001055744,0.3317775,0.0001637435,0.0004350606,0.0002811601,0.000157733,0.000008202657,0.6543896,0.00007783643,0.0007586695,0.005787735],"study_design_scores_gemma":[0.008343928,0.00655019,0.1250726,0.001504262,0.001340629,0.002418639,0.001018301,0.0002317571,0.8446727,0.000472559,0.00768995,0.0006844899],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960537,0.001726254,0.0000625582,0.0007533843,0.0006485793,0.0001925363,0.00004097947,0.00001817417,0.0005038339],"genre_scores_gemma":[0.9961171,0.00143675,0.001542783,0.0001650263,0.0005383515,0.000002297516,0.00001346584,0.00002668533,0.0001575597],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2067049,"threshold_uncertainty_score":0.7250192,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1550283265460001,"score_gpt":0.3952598572839606,"score_spread":0.2402315307379605,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}