{"id":"W1973572327","doi":"10.1371/journal.pone.0073627","title":"Transcriptome Sequence and Plasmid Copy Number Analysis of the Brewery Isolate Pediococcus claussenii ATCC BAA-344T during Growth in Beer","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Fermentation and Sensory Analysis","field":"Agricultural and Biological Sciences","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; North Carolina State University; U.S. Department of Agriculture","keywords":"Transcriptome; Biology; Plasmid; Gene; Illumina dye sequencing; Genetics; Operon; Bacteria; De novo transcriptome assembly; Genome; Gene expression; Mutant","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001518346,0.0003831509,0.000866684,0.0006906646,0.0005137099,0.0007255359,0.0001997861,0.0003482141,0.001241195],"category_scores_gemma":[0.0004058045,0.0002498761,0.0005849545,0.001496205,0.0002210317,0.0002422402,0.0003810377,0.0008272905,0.001066817],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003187487,"about_ca_system_score_gemma":0.0004060545,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00324799,"about_ca_topic_score_gemma":0.002942886,"domain_scores_codex":[0.9997454,0.00001424723,0.00001637671,0.00008683833,0.0000868984,0.00005028641],"domain_scores_gemma":[0.9997427,0.00007318026,0.00005406864,0.00002063577,0.00007612468,0.00003324027],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002136576,0.00002905127,0.001895117,0.0001462528,0.00001471076,0.000155164,0.0002387008,0.0002052494,0.9922926,0.00004375496,0.0002280644,0.004537629],"study_design_scores_gemma":[0.00006913886,0.0009784941,0.5485027,0.0001882324,0.0003818286,0.002067383,0.002222009,0.009935278,0.4002446,0.0004202809,0.03481818,0.0001718488],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9371729,0.0015042,0.006169331,0.0002393004,0.00006249022,0.000124989,0.05167417,0.0002931802,0.002759318],"genre_scores_gemma":[0.8235131,0.002509626,0.02145089,0.000335083,0.00006177045,0.0005041997,0.1423036,0.000475172,0.008846656],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00324799,"threshold_uncertainty_score":0.006458163,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03341110868305584,"score_gpt":0.208910738712987,"score_spread":0.1754996300299312,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}