{"id":"W1974041884","doi":"10.1186/s12862-015-0339-8","title":"Do larger genomes contain more diverse transposable elements?","year":2015,"lang":"en","type":"article","venue":"BMC Evolutionary Biology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":99,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Genome; Genome size; Evolutionary biology; Transposable element; Phylogenetic tree; Genome evolution; Phylogenetics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001549427,0.000111117,0.0001314403,0.00001163153,0.0001701556,0.00001250555,0.0001857093,0.0001088293,0.00140029],"category_scores_gemma":[0.00003722305,0.00004538048,0.00007692466,0.000172976,0.0000873169,0.00006586706,0.00006022123,0.00005842416,0.0002292079],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004681359,"about_ca_system_score_gemma":0.00003738665,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001189213,"about_ca_topic_score_gemma":0.0004413993,"domain_scores_codex":[0.9990723,0.0001021361,0.0001882089,0.0002664471,0.00009622776,0.0002746686],"domain_scores_gemma":[0.999578,0.00008826165,0.00005199556,0.00005669201,0.00009614315,0.0001289303],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00005816938,0.0001487077,0.9703417,0.000002296512,0.00002265267,0.000002703639,0.0001252721,0.00004081596,0.01499961,0.006812289,0.004058891,0.003386846],"study_design_scores_gemma":[0.0006459765,0.0004470131,0.6135897,0.000004628704,0.00002323113,0.00001976461,0.001140464,0.0005780872,0.0001034287,0.01196516,0.3712187,0.0002638391],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939012,0.001657139,0.00004906662,0.001654334,0.0002689426,0.0002143311,0.0004007031,0.00006931731,0.001784969],"genre_scores_gemma":[0.9965107,0.00003556555,0.001340034,0.0002616256,0.0003567336,0.00003010277,0.0006050796,7.456585e-7,0.0008594564],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3671598,"threshold_uncertainty_score":0.9995126,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04739326982541084,"score_gpt":0.2586503195801632,"score_spread":0.2112570497547523,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}